I get a new error, when I try to compile an R Markdown file it appears the next message:
Error: C stack usage 7971408 is too close to the limit Execution halted
I did some research and I found some people with the same error:
- Error: C stack usage is too close to the limit
- C stack usage 7970960 is too close to the limit
- GenomicRanges: C stack usage ... is too close to the limit
- R mapping (C stack usage 7971616 is too close to the limit)
- C stack usage 7972356 is too close to the limit #335
But these guys have problems with some function or something like that.
The actions I did in orden to try to solve this situation:
- Uninstall R and RStudio, reinstall de last versions of both, reboot my computer... nothing.
- Try to change
ulimit -s, and this point is interesting because this is my
ulimit -aon R terminal:
geomicrobio-mac:~ geomicrobio$ ulimit -a core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited file size (blocks, -f) unlimited max locked memory (kbytes, -l) unlimited max memory size (kbytes, -m) unlimited open files (-n) 10240 pipe size (512 bytes, -p) 1 stack size (kbytes, -s) 8192 cpu time (seconds, -t) unlimited max user processes (-u) 1392 virtual memory (kbytes, -v) unlimited
When I try to change de
ulimit -s for
65532 on R terminal, it doesn't change.
ulimit -a of my terminal (macOS Monterey v12.0.1) is:
-t: cpu time (seconds) unlimited -f: file size (blocks) unlimited -d: data seg size (kbytes) unlimited -s: stack size (kbytes) 65532 -c: core file size (blocks) 0 -v: address space (kbytes) unlimited -l: locked-in-memory size (kbytes) unlimited -u: processes 1392 -n: file descriptors 2560
This just happen with R Markdown, I can do Shinny apps, and run scripts, etc. but I can`t compile any R Markdown despite it contains only text.
This is the info when I put
base::Cstack_info() on console:
size current direction eval_depth 7969177 14032 1 2
My version of R:
platform x86_64-apple-darwin17.0 arch x86_64 os darwin17.0 system x86_64, darwin17.0 status major 4 minor 1.2 year 2021 month 11 day 01 svn rev 81115 language R version.string R version 4.1.2 (2021-11-01) nickname Bird Hippie
If you know how to solve this I really appreciate your help.