Error: Cannot run anything!

General
#1

Hi, i've been trying to install a package called "kuenm", but I can't:

if(!require(kuenm)){
devtools::install_github("marlonecobos/kuenm")
}

Error in get(Info[i, 1], envir = env) :
não foi possível abrir o arquivo 'C:/Users/Usuário/Documents/R/win-library/4.0/crayon/R/crayon.rdb': No such file or directory

or

install.packages("kuenm")

install.packages("kuenm")
Installing package into ‘C:/Users/Usuário/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘kuenm’ is not available (for R version 4.0.0)

I can't even load some packages needed for this:

library(devtools)
Carregando pacotes exigidos: usethis
Error: package or namespace load failed for ‘usethis’ in get(Info[i, 1], envir = env):
não foi possível abrir o arquivo 'C:/Users/Usuário/Documents/R/win-library/4.0/fs/R/fs.rdb': No such file or directory
Erro: package ‘usethis’ could not be loaded

and don't ask me about reprex either:

library(reprex)
Erro: package or namespace load failed for ‘reprex’ in get(Info[i, 1], envir = env):
não foi possível abrir o arquivo 'C:/Users/Usuário/Documents/R/win-library/4.0/fs/R/fs.rdb': No such file or directory

I think is something related to windows permision, but I really don't know what's going on.

#2

R has problems with non-ASCII characters in your windows user name, you have to either change your username or install into the system level package library instead of the user level one.

#3

I've deleted everything and re-install direct into the C:, but still cannot run devtools.

library(devtools)
Carregando pacotes exigidos: usethis
Error: package or namespace load failed for ‘usethis’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘rlang’
Erro: package ‘usethis’ could not be loaded

#4

What happens if you try to install the missing dependency?

install.packages("rlang")
#5

install.packages("rlang")

There is a binary version available but the source version is later:
binary source needs_compilation
rlang 0.4.5 0.4.6 TRUE

installing the source package ‘rlang’

tentando a URL 'http://cran.rstudio.com/src/contrib/rlang_0.4.6.tar.gz'
Content type 'application/x-gzip' length 835198 bytes (815 KB)
downloaded 815 KB

  • installing source package 'rlang' ...
    ** package 'rlang' successfully unpacked and MD5 sums checked
    ** using staged installation
    ** libs

*** arch - i386
"c:/rtools40/mingw32/bin/"gcc -I"C:/R/R-40~1.0/include" -DNDEBUG -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c capture.c -o capture.o
sh: c:/rtools40/mingw32/bin/gcc: No such file or directory
make: *** [C:/R/R-40~1.0/etc/i386/Makeconf:222: capture.o] Error 127
ERROR: compilation failed for package 'rlang'

  • removing 'C:/R/R-4.0.0/library/rlang'
    Warning in install.packages :
    installation of package ‘rlang’ had non-zero exit status

The downloaded source packages are in
‘C:\Users\Usuário\AppData\Local\Temp\RtmpeeOrX9\downloaded_packages’

#6

It seems you also have the 32 bit version of R but you haven't installed the 32 bit compiler of Rtools40. I would recommend not installing the 32 bit version if it not strictly needed.

#7

I've did everything again, but only have installed the 64 version, and gotch the exactly same error that I previously posted.

#8

That doesn't seems right, if it is exactly the same then you still have the 32 bit version installed.

#9

Sorry, have no realized that. Here after re-installed:

install.packages("rlang")
Installing package into ‘C:/Users/Usuário/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)

There is a binary version available but the source version is later:
binary source needs_compilation
rlang 0.4.5 0.4.6 TRUE

installing the source package ‘rlang’

tentando a URL 'http://cran.rstudio.com/src/contrib/rlang_0.4.6.tar.gz'
Content type 'application/x-gzip' length 835198 bytes (815 KB)
downloaded 815 KB

  • installing source package 'rlang' ...
    ** package 'rlang' successfully unpacked and MD5 sums checked
    ** using staged installation
    ** libs
    "c:/rtools40/mingw64/bin/"gcc -I"C:/PROGRA~1/R/R-40~1.0/include" -DNDEBUG -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c capture.c -o capture.o
    sh: c:/rtools40/mingw64/bin/gcc: No such file or directory
    make: *** [C:/PROGRA~1/R/R-40~1.0/etc/x64/Makeconf:222: capture.o] Error 127
    ERROR: compilation failed for package 'rlang'
  • removing 'C:/Users/Usuário/Documents/R/win-library/4.0/rlang'
    Warning in install.packages :
    installation of package ‘rlang’ had non-zero exit status

The downloaded source packages are in
‘C:\Users\Usuário\AppData\Local\Temp\RtmpQTbfoX\downloaded_packages’

#10

You are still installing packages into your user level package library, as I said R has problems with the non-ASCII character in your windows user name, either change your username or install into the system level package library.

#11

I've done again. Now this happen:

install.packages("rlang")
Installing package into ‘C:/R-4.0.0/library’
(as ‘lib’ is unspecified)

There is a binary version available but the source version is later:
binary source needs_compilation
rlang 0.4.5 0.4.6 TRUE

installing the source package ‘rlang’

tentando a URL 'http://cran.rstudio.com/src/contrib/rlang_0.4.6.tar.gz'
Content type 'application/x-gzip' length 835198 bytes (815 KB)
downloaded 815 KB

  • installing source package 'rlang' ...
    ** package 'rlang' successfully unpacked and MD5 sums checked
    ** using staged installation
    ** libs
    "c:/rtools40/mingw64/bin/"gcc -I"C:/R-40~1.0/include" -DNDEBUG -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c capture.c -o capture.o
    sh: c:/rtools40/mingw64/bin/gcc: No such file or directory
    make: *** [C:/R-40~1.0/etc/x64/Makeconf:222: capture.o] Error 127
    ERROR: compilation failed for package 'rlang'
  • removing 'C:/R-4.0.0/library/rlang'
    Warning in install.packages :
    installation of package ‘rlang’ had non-zero exit status

The downloaded source packages are in
‘C:\Users\Usuário\AppData\Local\Temp\Rtmp8QbGqq\downloaded_packages’

I think that the old library is crossing with the new one because I didn't delete?

#12

I can not reproduce your issue, the only thing that comes to my mind is that you have a corrupted Rtools installation, I would try reinstalling Rtools, restarting the R session and installing the package again.

#13

Hey, so i've been trying different things to make this work. A friend of mine suggested to install and run R on Jupyter notebook. I did and for now it's workin'. Don't know why or what it's goin on my pc.

But anyway, thanks for the help. :slight_smile:

#14

I have had the same problem with a different package as soon as I installed R 4.0 (the 64-bit version only)

I have no non-standard characters anywhere in the path and I have reinstalled rtools but I still get the same problem:

install.packages("showtext","C:/Program Files/R/R-4.0.0")

There is a binary version available but the source version is later:
binary source needs_compilation
showtext 0.7-1 0.8 TRUE

installing the source package ‘showtext’

trying URL ' the URL'
Content type 'application/x-gzip' length 378224 bytes (369 KB)
downloaded 369 KB

tar xzf sysfonts-dep-win-biarch.tar.gz
"c:/rtools40/mingw64/bin/"gcc -I"C:/PROGRA~1/R/R-40~1.0/include" -DNDEBUG -I./include -I./include/freetype -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array.c -o array.o
sh: c:/rtools40/mingw64/bin/gcc: No such file or directory
make: *** [C:/PROGRA~1/R/R-40~1.0/etc/x64/Makeconf:222: array.o] Error 127
ERROR: compilation failed for package 'showtext'

  • removing 'C:/Program Files/R/R-4.0.0/showtext'
    Warning in install.packages :
    installation of package ‘showtext’ had non-zero exit status

From the looks of it, it cannot find the Rtools40 directory -- probably because it does not exist. The mingw_64 is in Rtools, not Rtools40 (i tried to post the screenshot, but it won't let me). Reinstalling rtools has not changed that, so I am not sure why the installation script is asking for Rtools40. What am I doing wrong?

I'll appreciate any help with this. It's not the only issue that has popped up since I've updated R: knitr had to be reinstalled separately even though it was not showing as "old", but I am tackling this one problem at a time. Thanks!

#15

Have you followed the installation instructions from CRAN? after installing RTools40 (This is required for R 4.0.0) you have to set your PATH variable for R being able to find it, otherwise, it's going to use your previous RTools installation (RTools35).

https://cran.r-project.org/bin/windows/Rtools/

1 Like
#16

Installing Rtools40 fixed the problem. Thank you for your help!

#17

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