Hey guys , I'm new to R. I tried to install ggplot2 packages and I faced like those error.
I am using CentOS 8 , R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" and gcc (Homebrew GCC 5.5.0_7) 5.5.0
The error is as follow.
> install.packages("ggplot2")
Installing package into ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
also installing the dependencies ‘backports’, ‘rprojroot’, ‘pkgbuild’, ‘diffobj’, ‘rematch2’, ‘brio’, ‘callr’, ‘desc’, ‘jsonlite’, ‘pkgload’, ‘processx’, ‘ps’, ‘waldo’, ‘colorspace’, ‘utf8’, ‘testthat’, ‘farver’, ‘lifecycle’, ‘munsell’, ‘cli’, ‘ellipsis’, ‘fansi’, ‘pillar’, ‘vctrs’, ‘digest’, ‘glue’, ‘isoband’, ‘rlang’, ‘scales’, ‘tibble’
trying URL 'https://cloud.r-project.org/src/contrib/backports_1.2.0.tar.gz'
Content type 'application/x-gzip' length 21014 bytes (20 KB)
==================================================
downloaded 20 KB
* installing *source* package ‘backports’ ...
** package ‘backports’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dotsElt.c -o dotsElt.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: dotsElt.o] Error 1
ERROR: compilation failed for package ‘backports’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/backports’
* installing *source* package ‘diffobj’ ...
** package ‘diffobj’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c diff.c -o diff.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: diff.o] Error 1
ERROR: compilation failed for package ‘diffobj’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/diffobj’
* installing *source* package ‘brio’ ...
** package ‘brio’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c brio.c -o brio.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: brio.o] Error 1
ERROR: compilation failed for package ‘brio’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/brio’
* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c base64.c -o base64.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: base64.o] Error 1
ERROR: compilation failed for package ‘jsonlite’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/jsonlite’
* installing *source* package ‘ps’ ...
** package ‘ps’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall px.c -o px
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [Makevars:11: px] Error 1
ERROR: compilation failed for package ‘ps’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/ps’
* installing *source* package ‘colorspace’ ...
** package ‘colorspace’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c colorspace.c -o colorspace.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: colorspace.o] Error 1
ERROR: compilation failed for package ‘colorspace’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/colorspace’
* installing *source* package ‘utf8’ ...
** package ‘utf8’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c as_utf8.c -o as_utf8.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: as_utf8.o] Error 1
ERROR: compilation failed for package ‘utf8’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/utf8’
* installing *source* package ‘farver’ ...
** package ‘farver’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ColorSpace.cpp -o ColorSpace.o
cc1plus: error: unrecognized command line option '-fstack-clash-protection'
cc1plus: error: unrecognized command line option '-fcf-protection'
cc1plus: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:181: ColorSpace.o] Error 1
ERROR: compilation failed for package ‘farver’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/farver’
* installing *source* package ‘fansi’ ...
** package ‘fansi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c assumptions.c -o assumptions.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: assumptions.o] Error 1
ERROR: compilation failed for package ‘fansi’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/fansi’
* installing *source* package ‘digest’ ...
** package ‘digest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c SpookyV2.cpp -o SpookyV2.o
cc1plus: error: unrecognized command line option '-fstack-clash-protection'
cc1plus: error: unrecognized command line option '-fcf-protection'
cc1plus: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:181: SpookyV2.o] Error 1
ERROR: compilation failed for package ‘digest’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/digest’
* installing *source* package ‘glue’ ...
** package ‘glue’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c glue.c -o glue.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: glue.o] Error 1
ERROR: compilation failed for package ‘glue’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/glue’
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c capture.c -o capture.o
cc1: error: unrecognized command line option '-fstack-clash-protection'
cc1: error: unrecognized command line option '-fcf-protection'
cc1: fatal error: inaccessible plugin file /home/linuxbrew/.linuxbrew/Cellar/gcc/5.5.0_7/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/plugin/annobin.so expanded from short plugin name annobin: No such file or directory
compilation terminated.
make: *** [/usr/lib64/R/etc/Makeconf:172: capture.o] Error 1
ERROR: compilation failed for package ‘rlang’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/rlang’
ERROR: dependency ‘backports’ is not available for package ‘rprojroot’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/rprojroot’
ERROR: dependency ‘ps’ is not available for package ‘processx’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/processx’
ERROR: dependencies ‘glue’, ‘rlang’ are not available for package ‘lifecycle’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/lifecycle’
ERROR: dependency ‘colorspace’ is not available for package ‘munsell’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/munsell’
ERROR: dependencies ‘glue’, ‘fansi’ are not available for package ‘cli’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/cli’
ERROR: dependency ‘rlang’ is not available for package ‘ellipsis’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/ellipsis’
ERROR: dependency ‘processx’ is not available for package ‘callr’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/callr’
ERROR: dependency ‘rprojroot’ is not available for package ‘desc’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/desc’
ERROR: dependencies ‘ellipsis’, ‘digest’, ‘glue’, ‘rlang’ are not available for package ‘vctrs’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/vctrs’
ERROR: dependencies ‘farver’, ‘lifecycle’, ‘munsell’ are not available for package ‘scales’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/scales’
ERROR: dependencies ‘callr’, ‘cli’, ‘desc’, ‘rprojroot’ are not available for package ‘pkgbuild’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/pkgbuild’
ERROR: dependencies ‘cli’, ‘ellipsis’, ‘fansi’, ‘lifecycle’, ‘rlang’, ‘utf8’, ‘vctrs’ are not available for package ‘pillar’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/pillar’
ERROR: dependencies ‘cli’, ‘desc’, ‘pkgbuild’, ‘rlang’, ‘rprojroot’ are not available for package ‘pkgload’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/pkgload’
ERROR: dependencies ‘cli’, ‘ellipsis’, ‘fansi’, ‘lifecycle’, ‘pillar’, ‘rlang’, ‘vctrs’ are not available for package ‘tibble’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/tibble’
ERROR: dependency ‘tibble’ is not available for package ‘rematch2’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/rematch2’
ERROR: dependencies ‘cli’, ‘diffobj’, ‘fansi’, ‘glue’, ‘rematch2’, ‘rlang’, ‘tibble’ are not available for package ‘waldo’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/waldo’
ERROR: dependencies ‘brio’, ‘callr’, ‘cli’, ‘desc’, ‘digest’, ‘ellipsis’, ‘jsonlite’, ‘lifecycle’, ‘pkgload’, ‘processx’, ‘ps’, ‘rlang’, ‘waldo’ are not available for package ‘testthat’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/testthat’
ERROR: dependency ‘testthat’ is not available for package ‘isoband’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/isoband’
ERROR: dependencies ‘digest’, ‘glue’, ‘isoband’, ‘rlang’, ‘scales’, ‘tibble’ are not available for package ‘ggplot2’
* removing ‘/home/aungthetkhaing/R/x86_64-redhat-linux-gnu-library/4.0/ggplot2’
The downloaded source packages are in
‘/tmp/RtmpMovS4X/downloaded_packages’
There were 31 warnings (use warnings() to see them)
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