I'm trying to export a list into a fasta file. I'm using the seqinr package to first upload a fasta file and modify it, but now I need to export it back out. I try to use write.fasta() but it want's me to type the "names", but since my fasta file was read as a list there really isn't a "name" column.
The initial parts of the fasta list look like the following
> head(fasta_new)
$`tr|A0A383V272|A0A383V272_TETOB`
[1] "M" "T" "I" "G" "N" "T" "A" "V" "E" "E" "A" "K" "G" "L" "I" "C" "E" "L" "C" "R" "L" "F" "Y" "D" "Q" "G" "W" "V" "G" "G" "T" "G" "G" "G" "I" "S" "L"
[38] "K" "A" "L" "D" "D" "D" "G" "S" "E" "R" "I" "V" "M" "A" "P" "S" "G" "V" "Q" "K" "E" "R" "M" "E" "P" "R" "D" "M" "F" "V" "L" "D" "S" "Q" "G" "N" "V"
[75] "L" "H" "T" "P" "E" "A" "R" "P" "P" "P" "Y" "R" "P" "P" "K" "L" "S" "E" "C" "Q" "P" "L" "F" "T" "S" "A" "Y" "E" "L" "R" "G" "A" "G" "A" "V" "L" "H"
[112] "S" "H" "S" "L" "N" "A" "V" "M" "A" "T" "M" "L" "D" "P" "N" "A" "T" "E" "F" "C" "V" "T" "H" "I" "E" "M" "I" "K" "G" "I" "E" "G" "H" "G" "F" "Y" "G"
[149] "N" "C" "V" "V" "P" "I" "I" "E" "N" "T" "A" "R" "E" "C" "E" "L" "T" "D" "R" "M" "R" "Q" "A" "I" "I" "D" "Y" "P" "Q" "S" "N" "A" "V" "L" "V" "R" "R"
[186] "H" "G" "V" "Y" "V" "W" "G" "K" "D" "W" "I" "Q" "A" "K" "T" "Q" "A" "E" "C" "Y" "D" "Y" "L" "F" "E" "A" "A" "V" "K" "M" "A" "Q" "L" "G" "L" "N" "A"
[223] "A" "Q" "P" "P" "A" "P" "L" "I" "A" "N" "G" "A" "A" "Q" "Q" "G" "K" "R" "H" "A" "E" "N" "G" "V" "S" "E" "A" "N" "G" "V" "A" "A" "N" "G" "V" "A" "A"
[260] "K" "R" "A" "K" "L" "S" "H" "A" "A" "L" "P" "R" "A" "I" "V" "L" "D" "I" "E" "G" "T" "V" "A" "P" "I" "S" "F" "V" "A" "D" "V" "M" "F" "P" "Y" "A" "R"
[297] "D" "N" "V" "A" "A" "H" "L" "E" "A" "H" "Y" "E" "T" "P" "E" "A" "R" "A" "D" "I" "D" "A" "I" "R" "K" "Q" "A" "A" "E" "D" "G" "A" "A" "P" "I" "P" "D"
[334] "A" "T" "A" "G" "K" "E" "A" "V" "I" "A" "A" "V" "V" "S" "W" "V" "H" "A" "A" "I" "A" "A" "D" "R" "K" "I" "G" "A" "L" "K" "Q" "L" "Q" "G" "H" "V" "W"
[371] "R" "A" "G" "F" "R" "S" "G" "K" "M" "T" "A" "Q" "L" "F" "R" "D" "V" "P" "D" "A" "L" "V" "E" "W" "R" "N" "A" "G" "I" "K" "T" "Y" "I" "Y" "S" "S" "G"
[408] "S" "R" "E" "A" "Q" "H" "L" "F" "F" "G" "H" "S" "Q" "A" "G" "D" "L" "R" "P" "Y" "L" "C" "G" "Y" "F" "D" "T" "S" "S" "G" "L" "K" "G" "E" "A" "G" "S"
[445] "Y" "H" "N" "I" "Q" "L" "T" "L" "G" "V" "D" "D" "P" "S" "E" "V" "L" "F" "A" "T" "D" "M" "L" "A" "E" "A" "Q" "A" "A" "Q" "A" "A" "G" "W" "Q" "A" "V"
[482] "L" "V" "A" "R" "P" "G" "N" "K" "P" "L" "P" "E" "N" "H" "G" "F" "R" "V" "V" "E" "S" "M" "Q" "E" "L" "L" "K" "Q"
attr(,"name")
[1] "tr|A0A383VBW5|A0A383VBW5_TETOB"
attr(,"Annot")
[1] ">tr|A0A383VBW5|A0A383VBW5_TETOB Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS=Tetradesmus obliquus OX=3088 GN=BQ4739_LOCUS3629 PE=3 SV=1"
attr(,"class")
[1] "SeqFastaAA"
$`tr|A0A383V2J8|A0A383V2J8_TETOB`
[1] "M" "A" "S" "H" "P" "P" "T" "P" "S" "T" "I" "Y" "F" "A" "T" "G" "N" "K" "K" "K" "L" "E" "E" "V" "V" "A" "I" "L" "A" "A" "G" "H" "E" "L" "P" "F" "K"
[38] "V" "E" "P" "A" "K" "L" "D" "L" "P" "E" "L" "Q" "G" "E" "P" "E" "E" "I" "S" "I" "E" "K" "C" "R" "I" "A" "A" "K" "Q" "L" "G" "A" "A" "V" "M" "V" "E"
[75] "D" "T" "S" "L" "C" "F" "N" "A" "Y" "K" "G" "L" "P" "G" "P" "Y" "I" "K" "W" "F" "L" "E" "K" "L" "G" "H" "D" "G" "L" "N" "R" "M" "L" "A" "G" "F" "D"
[112] "D" "K" "S" "A" "Y" "A" "Q" "C" "I" "F" "A" "Y" "S" "P" "G" "P" "D" "A" "E" "P" "I" "T" "F" "V" "G" "R" "T" "E" "G" "A" "I" "V" "P" "A" "R" "G" "P"
[149] "A" "D" "F" "G" "W" "D" "P" "V" "F" "Q" "P" "D" "G" "F" "R" "E" "T" "Y" "A" "E" "M" "D" "K" "G" "V" "K" "N" "T" "I" "S" "H" "R" "Y" "R" "A" "L" "D"
[186] "K" "L" "R" "A" "H" "L" "V" "G" "N" "S" "G" "A" "A" "A" "E" "Q"
attr(,"name")
[1] "tr|A0A383VJT4|A0A383VJT4_TETOB"
attr(,"Annot")
[1] ">tr|A0A383VJT4|A0A383VJT4_TETOB Inosine triphosphate pyrophosphatase OS=Tetradesmus obliquus OX=3088 GN=BQ4739_LOCUS5887 PE=3 SV=1"
attr(,"class")
[1] "SeqFastaAA"
$`tr|A0A383V2K8|A0A383V2K8_TETOB`
[1] "M" "A" "D" "V" "E" "Q" "L" "R" "H" "E" "N" "A" "L" "L" "R" "E" "E" "L" "A" "K" "L" "R" "A" "Q" "L" "A" "T" "N" "A" "R" "K" "A" "D" "P" "G" "S" "A"
[38] "P" "A" "A" "A" "A" "A" "A" "A" "A" "A" "A" "A" "L" "P" "S" "T" "H" "D" "N" "S" "S" "N" "G" "C" "A" "A" "Q" "T" "V" "C" "S" "T" "C" "P" "I" "Q" "A"
[75] "D" "A" "A" "S" "L" "Q" "Q" "Q" "S" "E" "G" "A" "A" "A" "E" "Q" "A" "T" "A" "S" "S" "S" "S" "N" "A" "H" "Q" "A" "L" "H" "G" "L" "S" "K" "A" "Q" "V"
[112] "E" "R" "Y" "S" "R" "Q" "L" "L" "L" "P" "S" "F" "G" "I" "A" "A" "Q" "G" "R" "V" "C" "S" "S" "S" "V" "L" "I" "V" "G" "C" "G" "G" "L" "G" "S" "P" "A"
[149] "A" "L" "Y" "L" "A" "A" "A" "G" "V" "R" "K" "L" "G" "L" "V" "D" "H" "D" "V" "V" "E" "L" "S" "N" "M" "H" "R" "Q" "V" "S" "H" "S" "E" "Q" "R" "L" "G"
[186] "M" "H" "K" "A" "A" "S" "T" "A" "A" "A" "V" "A" "A" "L" "N" "S" "S" "V" "A" "V" "D" "T" "H" "L" "Q" "G" "L" "T" "P" "S" "N" "A" "V" "G" "I" "I" "S"
[223] "Q" "Y" "D" "V" "V" "I" "D" "A" "S" "D" "N" "A" "P" "T" "R" "Y" "L" "I" "N" "D" "A" "C" "V" "A" "C" "G" "V" "P" "L" "V" "S" "A" "A" "A" "V" "G" "T"
[260] "D" "G" "Q" "L" "T" "V" "Y" "N" "A" "G" "G" "N" "G" "P" "C" "Y" "R" "C" "L" "F" "P" "E" "C" "P" "A" "A" "A" "N" "C" "S" "R" "C" "A" "D" "A" "G" "V"
[297] "L" "G" "P" "V" "P" "G" "V" "M" "G" "V" "L" "Q" "A" "V" "E" "A" "I" "K" "L" "V" "G" "G" "V" "G" "Q" "P" "L" "A" "G" "K" "L" "L" "L" "Y" "D" "A" "L"
[334] "A" "G" "R" "F" "S" "S" "I" "K" "L" "R" "G" "K" "A" "P" "G" "C" "A" "A" "C" "G" "E" "G" "G" "M" "T" "R" "E" "G" "V" "A" "A" "F" "D" "Y" "A" "A" "F"
[371] "T" "G" "G" "Q" "T" "A" "N" "D" "G" "P" "P" "V" "P" "L" "A" "V" "L" "P" "A" "K" "Q" "R" "L" "T" "A" "A" "Q" "A" "A" "Q" "L" "L" "Q" "A" "A" "A" "A"
[408] "D" "G" "T" "A" "R" "E" "D" "D" "L" "P" "Q" "Q" "Q" "Q" "Q" "Q" "Q" "Q" "Q" "Q" "R" "N" "E" "G" "A" "K" "A" "L" "V" "L" "L" "D" "V" "R" "P" "P" "E"
[445] "Q" "F" "A" "V" "M" "S" "L" "P" "G" "A" "V" "S" "V" "P" "Y" "L" "Q" "L" "E" "Q" "R" "L" "P" "E" "V" "L" "A" "L" "C" "G" "A" "S" "S" "A" "A" "A" "Q"
[482] "Q" "H" "D" "A" "A" "A" "A" "A" "G" "S" "I" "S" "N" "G" "T" "S" "N" "S" "S" "S" "S" "Q" "R" "V" "V" "V" "L" "C" "R" "R" "G" "N" "H" "S" "Q" "L" "A"
[519] "V" "Q" "R" "L" "R" "Q" "A" "G" "V" "P" "A" "V" "D" "V" "V" "G" "G" "Y" "E" "A" "W" "A" "A" "E" "V" "D" "S" "A" "M" "P" "V" "L"
attr(,"name")
[1] "tr|A0A383W957|A0A383W957_TETOB"
attr(,"Annot")
[1] ">tr|A0A383W957|A0A383W957_TETOB Adenylyltransferase and sulfurtransferase MOCS3 OS=Tetradesmus obliquus OX=3088 GN=MOCS3 PE=3 SV=1"
attr(,"class")
[1] "SeqFastaAA"
$`tr|A0A383V2K8|A0A383V2K8_TETOB`
[1] "M" "A" "F" "D" "E" "G" "G" "V" "Y" "Y" "A" "F" "Q" "G" "D" "E" "D" "Q" "Q" "D" "L" "R" "P" "R" "A" "Q" "T" "I" "A" "D" "F" "K" "D" "F" "I" "T" "K"
[38] "F" "Y" "P" "A" "N" "Q" "Q" "Q" "T" "F" "I" "Y" "R" "D" "K" "L" "M" "K" "N" "H" "A" "S" "L" "E" "V" "D" "L" "V" "H" "V" "R" "E" "F" "N" "Q" "E" "L"
[75] "G" "D" "G" "L" "E" "N" "K" "P" "A" "E" "Y" "L" "P" "L" "F" "E" "R" "A" "A" "K" "E" "V" "L" "Q" "E" "D" "H" "Q" "L" "T" "A" "E" "G" "E" "E" "Q" "A"
[112] "F" "E" "D" "V" "Q" "L" "L" "L" "F" "S" "S" "Q" "P" "F" "G" "P" "Q" "G" "M" "R" "S" "I" "T" "S" "G" "R" "V" "S" "Q" "L" "V" "Q" "I" "S" "G" "I" "V"
[149] "T" "S" "C" "S" "K" "Q" "K" "H" "K" "A" "S" "Y" "L" "T" "V" "Q" "C" "K" "E" "C" "R" "A" "T" "Q" "V" "V" "P" "C" "K" "P" "G" "L" "G" "G" "A" "L" "L"
[186] "P" "R" "R" "C" "E" "T" "V" "D" "P" "V" "T" "N" "T" "P" "C" "P" "P" "N" "S" "W" "V" "V" "L" "G" "E" "R" "S" "R" "Y" "V" "D" "Q" "Q" "T" "L" "K" "L"
[223] "Q" "E" "R" "P" "E" "D" "I" "P" "T" "G" "E" "L" "P" "R" "T" "L" "L" "M" "V" "A" "D" "R" "H" "L" "V" "G" "R" "V" "T" "P" "G" "S" "R" "L" "V" "V" "T"
[260] "G" "I" "Y" "C" "T" "H" "R" "S" "A" "A" "M" "D" "K" "G" "P" "A" "N" "A" "T" "L" "Q" "L" "P" "Y" "L" "R" "V" "V" "D" "L" "Q" "E" "D" "S" "Q" "A" "H"
[297] "A" "D" "D" "S" "F" "S" "N" "A" "E" "R" "Q" "A" "F" "L" "D" "L" "S" "H" "D" "P" "D" "I" "I" "P" "K" "I" "A" "A" "S" "I" "A" "P" "K" "I" "R" "G" "Q"
[334] "D" "D" "I" "K" "M" "A" "I" "A" "C" "L" "L" "F" "G" "G" "S" "R" "K" "I" "M" "P" "D" "G" "T" "A" "R" "R" "G" "D" "I" "N" "V" "L" "L" "L" "G" "D" "P"
[371] "S" "V" "G" "K" "S" "Q" "F" "L" "K" "F" "V" "S" "K" "V" "A" "P" "I" "C" "V" "Y" "T" "S" "G" "K" "G" "S" "S" "A" "A" "G" "L" "T" "A" "A" "V" "V" "Q"
[408] "D" "A" "S" "S" "R" "E" "F" "F" "L" "E" "G" "G" "A" "M" "V" "L" "A" "D" "G" "G" "V" "V" "C" "I" "D" "E" "F" "D" "K" "M" "R" "P" "E" "D" "R" "V" "A"
[445] "I" "H" "E" "A" "M" "E" "Q" "Q" "T" "I" "S" "I" "A" "K" "A" "G" "I" "T" "T" "V" "L" "K" "S" "R" "T" "S" "V" "L" "A" "A" "A" "N" "P" "P" "S" "G" "R"
[482] "Y" "D" "D" "L" "S" "S" "A" "S" "D" "N" "I" "D" "L" "Q" "T" "T" "I" "L" "S" "R" "F" "D" "L" "I" "F" "I" "V" "R" "D" "V" "P" "D" "E" "A" "R" "D" "Q"
[519] "D" "I" "A" "R" "H" "V" "L" "S" "V" "H" "S" "G" "A" "S" "R" "P" "Q" "G" "V" "A" "R" "G" "G" "G" "A" "A" "A" "A" "G" "G" "N" "A" "N" "G" "D" "V" "A"
[556] "S" "D" "S" "E" "P" "P" "I" "D" "E" "V" "T" "L" "K" "R" "F" "I" "R" "Y" "C" "R" "S" "H" "C" "F" "P" "R" "M" "E" "E" "Q" "S" "A" "G" "R" "L" "V" "A"
[593] "K" "Y" "V" "E" "L" "R" "D" "K" "A" "R" "Q" "A" "K" "A" "S" "S" "E" "G" "E" "D" "S" "P" "I" "P" "M" "T" "V" "R" "Q" "L" "E" "A" "L" "V" "R" "I" "S"
[630] "E" "S" "F" "A" "R" "M" "S" "L" "A" "A" "E" "A" "D" "D" "G" "H" "V" "A" "A" "A" "F" "D" "L" "F" "T" "K" "S" "T" "I" "N" "A" "M" "N" "A" "G" "L" "I"
[667] "N" "S" "S" "E" "R" "L" "E" "V" "S" "A" "T" "Q" "D" "V" "E" "A" "R" "L" "C" "E" "R" "L" "H" "I" "G" "G" "H" "V" "S" "Y" "R" "R" "L" "L" "E" "D" "M"
[704] "A" "G" "L" "G" "Y" "S" "N" "Q" "Q" "V" "G" "L" "A" "V" "K" "V" "M" "L" "S" "R" "G" "Q" "L" "R" "R" "K" "A" "E" "G" "K" "M" "L" "E" "R" "C" "Q"
attr(,"name")
[1] "tr|A0A383V1J2|A0A383V1J2_TETOB"
attr(,"Annot")
[1] ">tr|A0A383V1J2|A0A383V1J2_TETOB DNA replication licensing factor MCM5 OS=Tetradesmus obliquus OX=3088 GN=BQ4739_LOCUS38 PE=3 SV=1"
attr(,"class")
[1] "SeqFastaAA"
$`tr|A0A383V2K8|A0A383V2K8_TETOB`
[1] "M" "V" "Y" "C" "G" "L" "F" "P" "T" "D" "A" "D" "D" "Y" "Q" "D" "L" "R" "E" "A" "L" "G" "K" "L" "Q" "L" "N" "D" "A" "A" "L" "K" "F" "E" "P" "E" "V"
[38] "N" "N" "A" "M" "G" "F" "G" "F" "R" "C" "G" "F" "L" "G" "L" "L" "H" "M" "E" "I" "V" "Q" "E" "R" "L" "E" "R" "E" "Y" "N" "L" "D" "L" "V" "T" "T" "A"
[75] "P" "T" "V" "V" "Y" "K" "T" "L" "T" "N" "T" "G" "E" "E" "L" "T" "V" "N" "S" "P" "G" "D" "L" "P" "E" "A" "T" "K" "R" "Q" "N" "I" "S" "E" "P" "Y" "V"
[112] "R" "L" "E" "M" "V" "T" "P" "T" "E" "Y" "V" "G" "N" "L" "M" "E" "L" "A" "N" "N" "R" "R" "G" "E" "F" "V" "E" "M" "K" "Y" "L" "T" "D" "S" "R" "T" "T"
[149] "L" "V" "F" "N" "I" "P" "L" "A" "E" "V" "V" "T" "D" "Y" "F" "D" "Q" "L" "K" "S" "R" "S" "K" "G" "Y" "A" "S" "M" "E" "Y" "K" "I" "T" "G" "Y" "R" "V"
[186] "N" "E" "L" "V" "L" "L" "E" "I" "K" "I" "N" "G" "E" "P" "A" "E" "P" "L" "S" "V" "I" "C" "H" "R" "D" "H" "A" "Y" "R" "T" "G" "K" "A" "L" "C" "A" "K"
[223] "L" "K" "E" "L" "I" "P" "R" "Q" "M" "F" "R" "V" "P" "I" "Q" "A" "C" "I" "G" "A" "K" "V" "I" "A" "S" "E" "A" "I" "A" "P" "Y" "R" "K" "D" "V" "L" "A"
[260] "K" "C" "Y" "G" "G" "D" "I" "S" "R" "K" "K" "K" "L" "L" "Q" "K" "Q" "A" "D" "G" "K" "K" "R" "M" "K" "Q" "L" "G" "K" "V" "E" "V" "P" "Q" "A" "A" "F"
[297] "M" "A" "V" "L" "K" "I" "N" "Q" "D" "S" "D" "S"
attr(,"name")
[1] "tr|A0A383V310|A0A383V310_TETOB"
attr(,"Annot")
[1] ">tr|A0A383V310|A0A383V310_TETOB Translation factor GUF1 homolog, mitochondrial OS=Tetradesmus obliquus OX=3088 GN=BQ4739_LOCUS568 PE=3 SV=1"
attr(,"class")
[1] "SeqFastaAA"
$`tr|A0A383V2K8|A0A383V2K8_TETOB`
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[334] "G" "F" "R" "C" "G" "F" "L" "G" "L" "L" "H" "M" "E" "I" "V" "Q" "E" "R" "L" "E" "R" "E" "Y" "N" "L" "D" "L" "V" "T" "T" "A" "P" "T" "V" "V" "Y" "K"
[371] "T" "L" "T" "N" "T" "G" "E" "E" "L" "T" "V" "N" "S" "P" "G" "D" "L" "P" "E" "A" "T" "K" "R" "Q" "N" "I" "S" "E" "P" "Y" "V" "R" "L" "E" "M" "V" "T"
[408] "P" "T" "E" "Y" "V" "G" "N" "L" "M" "E" "L" "A" "N" "N" "R" "R" "G" "E" "F" "V" "E" "M" "K" "Y" "L" "T" "D" "S" "R" "T" "T" "L" "V" "F" "N" "I" "P"
[445] "L" "A" "E" "V" "V" "T" "D" "Y" "F" "D" "Q" "L" "K" "S" "R" "S" "K" "G" "Y" "A" "S" "M" "E" "Y" "K" "I" "T" "G" "Y" "R" "V" "N" "E" "L" "V" "L" "L"
[482] "E" "I" "K" "I" "N" "G" "E" "P" "A" "E" "P" "L" "S" "V" "I" "C" "H" "R" "D" "H" "A" "Y" "R" "T" "G" "K" "A" "L" "C" "A" "K" "L" "K" "E" "L" "I" "P"
[519] "R" "Q" "M" "F" "R" "V" "P" "I" "Q" "A" "C" "I" "G" "A" "K" "V" "I" "A" "S" "E" "A" "I" "A" "P" "Y" "R" "K" "D" "V" "L" "A" "K" "C" "Y" "G" "G" "D"
[556] "I" "S" "R" "K" "K" "K" "L" "L" "Q" "K" "Q" "A" "D" "G" "K" "K" "R" "M" "K" "Q" "L" "G" "K" "V" "E" "V" "P" "Q" "A" "A" "F" "M" "A" "V" "L" "K" "I"
[593] "N" "Q" "D" "S" "D" "S"
attr(,"name")
[1] "tr|A0A383V337|A0A383V337_TETOB"
attr(,"Annot")
[1] ">tr|A0A383V337|A0A383V337_TETOB Translation factor GUF1 homolog, mitochondrial OS=Tetradesmus obliquus OX=3088 GN=BQ4739_LOCUS568 PE=3 SV=1"
attr(,"class")
[1] "SeqFastaAA"
Since there are so many sequences I can't type everything in individually, so I need a way about this. I've never used fastas with Rstudio before, so I really have no idea where to start.