installing spdep package

General
1

I am having an issue installing the spdep package in RStudio, i keep on geeting the following message: Warning in install.packages : installation of package 'spdep' had non-zero exit status

The downloaded source packages are in
'/private/var/folders/9t/bn0yq2055_192scxzp2d767179fm3t/T/Rtmp8k3IJh/downloaded_packages'

Any idea how to get around this

Regards

2

Hi, welcome!
Could you post the whole error message? You are omitting the important parts.

3

Thanks Sustainer for your quick response here is part of the message

Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'zone/tz/2019c.1.0/zoneinfo/Africa/Nairobi'

  • installing source package 'deldir' ...
    ** package 'deldir' successfully unpacked and MD5 sums checked
    ** libs
    gfortran-4.8 -fPIC -g -O2 -c acchk.f -o acchk.o
    make: gfortran-4.8: No such file or directory
    make: *** [acchk.o] Error 1
    ERROR: compilation failed for package 'deldir'
  • removing '/Users/ineema/Library/R/3.3/library/deldir'
    Warning in install.packages :
    installation of package 'deldir' had non-zero exit status
    During startup - Warning messages:
    1: Setting LC_CTYPE failed, using "C"
    2: Setting LC_TIME failed, using "C"
    3: Setting LC_MESSAGES failed, using "C"
    4: Setting LC_MONETARY failed, using "C"
    Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
    unknown timezone 'zone/tz/2019c.1.0/zoneinfo/Africa/Nairobi'
  • installing source package 'expm' ...
    ** package 'expm' successfully unpacked and MD5 sums checked
    ** libs
    clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c R_dgebal.c -o R_dgebal.o
    clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c expm-eigen.c -o expm-eigen.o
    clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c expm.c -o expm.o
    clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o
    clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c logm-eigen.c -o logm-eigen.o
    gfortran-4.8 -fPIC -g -O2 -c matexp.f -o matexp.o
    make: gfortran-4.8: No such file or directory
    make: *** [matexp.o] Error 1
    ERROR: compilation failed for package 'expm'
  • removing '/Users/ineema/Library/R/3.3/library/expm'
    Warning in install.packages :
    installation of package 'expm' had non-zero exit status
    During startup - Warning messages:
    1: Setting LC_CTYPE failed, using "C"
    2: Setting LC_TIME failed, using "C"
    3: Setting LC_MESSAGES failed, using "C"
    4: Setting LC_MONETARY failed, using "C"
    Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
    unknown timezone 'zone/tz/2019c.1.0/zoneinfo/Africa/Nairobi'
    ERROR: dependencies 'classInt', 'units' are not available for package 'sf'
  • removing '/Users/ineema/Library/R/3.3/library/sf'
    Warning in install.packages :
    installation of package 'sf' had non-zero exit status
    During startup - Warning messages:
    1: Setting LC_CTYPE failed, using "C"
    2: Setting LC_TIME failed, using "C"
    3: Setting LC_MESSAGES failed, using "C"
    4: Setting LC_MONETARY failed, using "C"
    Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
    unknown timezone 'zone/tz/2019c.1.0/zoneinfo/Africa/Nairobi'
    ERROR: dependencies 'sf', 'deldir', 'expm' are not available for package 'spdep'
  • removing '/Users/ineema/Library/R/3.3/library/spdep'
    Warning in install.packages :
    installation of package 'spdep' had non-zero exit status

The downloaded source packages are in
'/private/var/folders/9t/bn0yq2055_192scxzp2d767179fm3t/T/Rtmp8k3IJh/downloaded_packages'

Regards

4

Do you have xcode installed in your system? You need it for compiling packages on MacOS

xcode-select --install

Here are some installation instructions

5

thanks i will follow the instruction

6

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