Due to quite some duplicated setting files and make me confused when configure setting on startup::startup() (noticed that the startup codes will colorised if open R via Linux console, but direct open with Rconsole won't), wonder which R follow which setting files:
:~$ ls /etc/R/
ldpaths Makeconf Renviron Renviron.site repositories Rprofile.site
:~$ ls /usr/share/R/share/R/
examples-footer.R examples-header.R nspackloader.R REMOVE.R tests-startup.R
:~$ ls /lib/R/etc/
javaconf ldpaths.new Makeconf.new Renviron.orig Renviron.ucf Rprofile.site
ldpaths Makeconf Renviron Renviron.site repositories
and then try to united the library(set to be only library) as below (since normally the packages will install to different directories and make me confused, windows normally only install in program files):
> # c("/usr/lib/R/library", "/lib/R/library/")
> .libPaths()
[1] "/usr/lib/R/library"
Below are some reference, wonder if configure the setting on only file ~/.Rprofile and ~/.Renviron with User-level will do?
- How to Change
.libPaths()permanently inR? - Managing
Rwith.Rprofile,.Renviron,Rprofile.site,Renviron.site,rsession.conf, andrepos.conf
When I configured above setting, RStudio startup became blank page.
Continuing the discussion from Rstudio opens to a blank white screen:
:~$ # Linux
:~$ export RSTUDIO_CHROMIUM_ARGUMENTS="--disable-gpu"
:~$ /usr/lib/rstudio/bin/rstudio
2021-12-13T17:37:38.511335Z [rdesktop] ERROR Main window closed unexpectedly; LOGGED FROM: rstudio::desktop::MainWindow::closeEvent(QCloseEvent*)::<lambda(QVariant)> src/cpp/desktop/DesktopMainWindow.cpp:524
:~$ # Linux
:~$ sudo micro ~/.config/RStudio/desktop.ini # $XDG_CONFIG_HOME/RStudio/desktop.ini
and then modify desktop.renderingEngine=software as below, Ctrl + S and Ctrl + Q (saved and exit).
[General]
cookies=@Invalid()
desktop.renderingEngine=software
[mainwindow]
geometry="@ByteArray(\x1\xd9\xd0\xcb\0\x3\0\0\0\0\x2=\0\0\0\x93\0\0\a[\0\0\x4\xf\0\0\x2\x41\0\0\0\xb8\0\0\aW\0\0\x4\v\0\0\0\0\0\0\0\0\a\x80\0\0\x2\x41\0\0\0\xb8\0\0\aW\0\0\x4\v)"
Source: Troubleshooting RStudio Rendering Errors
RStudio startup blank page and try to refer above but disabled gpu doesn't help.
Continuing the discussion from R Studio opens as black screen and doesn't work:
Continuing the discussion from RStudio can't establish a connection to R:
Source: Resetting RStudio Desktop's State
Continuing the discussion from Error : Error Starting R:
:~$ neofetch
.-/+oossssoo+/-. englianhu@Scibrokes-Trading
`:+ssssssssssssssssss+:` ---------------------------
-+ssssssssssssssssssyyssss+- OS: Ubuntu 20.04.3 LTS x86_64
.ossssssssssssssssssdMMMNysssso. Host: 23-p080d
/ssssssssssshdmmNNmmyNMMMMhssssss/ Kernel: 5.15.7-051507-generic
+ssssssssshmydMMMMMMMNddddyssssssss+ Uptime: 1 hour, 54 mins
/sssssssshNMMMyhhyyyyhmNMMMNhssssssss/ Packages: 6314 (dpkg), 29 (flatpak), 36 (snap)
.ssssssssdMMMNhsssssssssshNMMMdssssssss. Shell: bash 5.0.17
+sssshhhyNMMNyssssssssssssyNMMMysssssss+ Resolution: 1920x1080
ossyNMMMNyMMhsssssssssssssshmmmhssssssso DE: Plasma
ossyNMMMNyMMhsssssssssssssshmmmhssssssso WM: KWin
+sssshhhyNMMNyssssssssssssyNMMMysssssss+ WM Theme: Infinity-Aurorae
.ssssssssdMMMNhsssssssssshNMMMdssssssss. Theme: Infinity Dark Color [Plasma], Breeze [GTK2/
/sssssssshNMMMyhhyyyyhdNMMMNhssssssss/ Icons: Infinity-Dark-Icons [Plasma], Infinity-Dark
+sssssssssdmydMMMMMMMMddddyssssssss+ Terminal: konsole
/ssssssssssshdmNNNNmyNMMMMhssssss/ CPU: Intel i5-4590T (4) @ 3.000GHz
.ossssssssssssssssssdMMMNysssso. GPU: NVIDIA GeForce 710M
-+sssssssssssssssssyyyssss+- GPU: Intel HD Graphics
`:+ssssssssssssssssss+:` Memory: 11954MiB / 15894MiB
.-/+oossssoo+/-.
:~$ rstudio
"Uncaught TypeError: Cannot read property 'notifyRCrashed' of undefined"
qt.qpa.xcb: QXcbConnection: XCB error: 3 (BadWindow), sequence: 2013, resource id: 46162659, major code: 40 (TranslateCoords), minor code: 0
[1214/025842.221360:ERROR:file_io_posix.cc(152)] open /home/englianhu/.config/google-chrome/Crash Reports/pending/2723c874-944c-452a-9443-58e97f5c252b.lock: File exists (17)
Opening in existing browser session.
libva error: /usr/lib/x86_64-linux-gnu/dri/iHD_drv_video.so init failed
[54129:54129:0100/000000.920636:ERROR:sandbox_linux.cc(376)] InitializeSandbox() called with multiple threads in process gpu-process
R Session Startup Failure Report
RStudio Version
RStudio 2021.09.0-preview+341, "Ghost Orchid" (059a094c, 2021-09-01) for Ubuntu Bionic
Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) QtWebEngine/5.12.8 Chrome/69.0.3497.128 Safari/537.36
Error message
[No error available]
Process Output
The R session exited with code 1.
Error output:
[No errors emitted]Standard output:
[No output emitted]Logs
/home/englianhu/.local/share/rstudio/log/rsession-englianhu.log
2021-12-13T17:27:45.124111Z [rsession-englianhu] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() src/cpp/session/SessionMain.cpp:1431 2021-12-13T17:55:37.206921Z [rsession-englianhu] ERROR system error 98 (Address already in use); OCCURRED AT rstudio::core::Error rstudio::core::http::initTcpIpAcceptor(rstudio::core::http::SocketAcceptorService<rstudio_boost::asio::ip::tcp>&, const string&, const string&) src/cpp/session/http/SessionPosixHttpConnectionListener.cpp:103; LOGGED FROM: int main(int, char* const*) src/cpp/session/SessionMain.cpp:2088 2021-12-13T17:55:37.206921Z [rsession-englianhu] ERROR system error 98 (Address already in use); OCCURRED AT rstudio::core::Error rstudio::core::http::initTcpIpAcceptor(rstudio::core::http::SocketAcceptorService<rstudio_boost::asio::ip::tcp>&, const string&, const string&) src/cpp/session/http/SessionPosixHttpConnectionListener.cpp:103; LOGGED FROM: int main(int, char* const*) src/cpp/session/SessionMain.cpp:2088
There has another article RStudio Desktop IDE Will Not Start to refer.
Reference: