I have the following log fo the shiny deployment to the shinyapps.io
+ set -e
+ apt-get update -qq
+ apt-get install -y libudunits2-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libudunits2-0 libudunits2-data
The following NEW packages will be installed:
libudunits2-0 libudunits2-data libudunits2-dev
0 upgraded, 3 newly installed, 0 to remove and 37 not upgraded.
Need to get 429 kB of archives.
After this operation, 1026 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 429 kB in 0s (12.7 MB/s)
Selecting previously unselected package libudunits2-data.
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Preparing to unpack .../libudunits2-data_2.2.26-5_all.deb ...
Unpacking libudunits2-data (2.2.26-5) ...
Selecting previously unselected package libudunits2-0:amd64.
Preparing to unpack .../libudunits2-0_2.2.26-5_amd64.deb ...
Unpacking libudunits2-0:amd64 (2.2.26-5) ...
Selecting previously unselected package libudunits2-dev:amd64.
Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ...
Unpacking libudunits2-dev:amd64 (2.2.26-5) ...
Setting up libudunits2-data (2.2.26-5) ...
Setting up libudunits2-0:amd64 (2.2.26-5) ...
Setting up libudunits2-dev:amd64 (2.2.26-5) ...
Processing triggers for libc-bin (2.31-0ubuntu9.9) ...
[2023-03-24T07:27:15.271831155+0000] Execute script: packages/build/rgdal.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=focal
+ '[' focal == xenial ']'
+ apt-get update -qq
+ apt-get install -y libgdal-dev libproj-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.0.4+dfsg-1build3).
libproj-dev is already the newest version (6.3.1-1).
0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
[2023-03-24T07:27:17.589312711+0000] Execute script: packages/build/rgeos.sh
+ set -e
+ apt-get update -qq
+ apt-get install -y libgeos-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgeos-dev is already the newest version (3.8.0-1build1).
libgeos-dev set to manually installed.
0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
[2023-03-24T07:27:19.744922585+0000] Execute script: packages/build/sf.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=focal
+ '[' focal == xenial ']'
+ apt-get update -qq
+ apt-get install -y libudunits2-dev libgdal-dev libgeos-dev libproj-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.0.4+dfsg-1build3).
libgeos-dev is already the newest version (3.8.0-1build1).
libproj-dev is already the newest version (6.3.1-1).
libudunits2-dev is already the newest version (2.2.26-5).
0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
[2023-03-24T07:27:21.937688877+0000] Execute script: packages/build/gert.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=focal
+ '[' focal == xenial ']'
+ apt-get update -qq
+ apt-get install -y libgit2-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev
libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0
libssh2-1-dev
Suggested packages:
libgcrypt20-doc libmbedtls-doc
The following NEW packages will be installed:
libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev
libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0
libssh2-1-dev
0 upgraded, 11 newly installed, 0 to remove and 37 not upgraded.
Need to get 2668 kB of archives.
After this operation, 11.2 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1.1 [471 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB]
Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB]
Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libgpg-error-dev.
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(Reading database ... 237954 files and directories currently installed.)
Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ...
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Selecting previously unselected package libgcrypt20-dev.
Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1.1_amd64.deb ...
Unpacking libgcrypt20-dev (1.8.5-5ubuntu1.1) ...
Selecting previously unselected package libhttp-parser2.9:amd64.
Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ...
Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ...
Selecting previously unselected package libmbedcrypto3:amd64.
Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ...
Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ...
Selecting previously unselected package libmbedx509-0:amd64.
Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ...
Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ...
Selecting previously unselected package libmbedtls12:amd64.
Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ...
Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ...
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Setting up libgpg-error-dev (1.37-1) ...
Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ...
Setting up libhttp-parser2.9:amd64 (2.9.2-2) ...
Setting up libhttp-parser-dev (2.9.2-2) ...
Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ...
Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ...
Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ...
Setting up libgcrypt20-dev (1.8.5-5ubuntu1.1) ...
Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ...
Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ...
Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ...
Processing triggers for libc-bin (2.31-0ubuntu9.9) ...
[2023-03-24T07:27:31.644861480+0000] Installing R package: BH (1.81.0-1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘BH’ ...
* DONE (BH)
[2023-03-24T07:27:42.491139889+0000] Installing R package: DBI (1.1.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘DBI’ ...
* DONE (DBI)
[2023-03-24T07:27:42.863640542+0000] Installing R package: KernSmooth (2.23-20)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘KernSmooth’ ...
* DONE (KernSmooth)
[2023-03-24T07:27:43.216141544+0000] Installing R package: MASS (7.3-56)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘MASS’ ...
* DONE (MASS)
[2023-03-24T07:27:43.600598940+0000] Installing R package: R6 (2.5.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘R6’ ...
* DONE (R6)
[2023-03-24T07:27:43.923817718+0000] Installing R package: RColorBrewer (1.1-3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘RColorBrewer’ ...
* DONE (RColorBrewer)
[2023-03-24T07:27:44.237321505+0000] Installing R package: Rcpp (1.0.9)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘Rcpp’ ...
* DONE (Rcpp)
[2023-03-24T07:27:45.333524975+0000] Installing R package: assertthat (0.2.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘assertthat’ ...
* DONE (assertthat)
[2023-03-24T07:27:45.644330162+0000] Installing R package: backports (1.4.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘backports’ ...
* DONE (backports)
[2023-03-24T07:27:45.967152123+0000] Installing R package: base64enc (0.1-3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘base64enc’ ...
* DONE (base64enc)
[2023-03-24T07:27:46.278855467+0000] Installing R package: bit (4.0.5)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘bit’ ...
* DONE (bit)
[2023-03-24T07:27:46.649620078+0000] Installing R package: brew (1.0-8)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘brew’ ...
* DONE (brew)
[2023-03-24T07:27:46.989765077+0000] Installing R package: cli (3.5.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘cli’ ...
* DONE (cli)
[2023-03-24T07:27:47.387496172+0000] Installing R package: clipr (0.8.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘clipr’ ...
* DONE (clipr)
[2023-03-24T07:27:47.708539370+0000] Installing R package: colorspace (2.1-0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘colorspace’ ...
* DONE (colorspace)
[2023-03-24T07:27:48.217129454+0000] Installing R package: commonmark (1.9.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘commonmark’ ...
* DONE (commonmark)
[2023-03-24T07:27:48.581520102+0000] Installing R package: cpp11 (0.4.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘cpp11’ ...
* DONE (cpp11)
[2023-03-24T07:27:48.950588480+0000] Installing R package: crayon (1.5.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘crayon’ ...
* DONE (crayon)
[2023-03-24T07:27:49.268759961+0000] Installing R package: curl (4.3.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘curl’ ...
* DONE (curl)
[2023-03-24T07:27:49.656176376+0000] Installing R package: data.table (1.14.6)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘data.table’ ...
* DONE (data.table)
[2023-03-24T07:27:50.184314067+0000] Installing R package: digest (0.6.31)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘digest’ ...
* DONE (digest)
[2023-03-24T07:27:50.536925488+0000] Installing R package: evaluate (0.20)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘evaluate’ ...
* DONE (evaluate)
[2023-03-24T07:27:50.850673828+0000] Installing R package: fansi (1.0.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘fansi’ ...
* DONE (fansi)
[2023-03-24T07:27:51.187720813+0000] Installing R package: farver (2.1.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘farver’ ...
* DONE (farver)
[2023-03-24T07:27:51.709855010+0000] Installing R package: fastmap (1.1.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘fastmap’ ...
* DONE (fastmap)
[2023-03-24T07:27:52.050102544+0000] Installing R package: fs (1.6.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘fs’ ...
* DONE (fs)
[2023-03-24T07:27:52.426205182+0000] Installing R package: generics (0.1.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘generics’ ...
* DONE (generics)
[2023-03-24T07:27:52.740406286+0000] Installing R package: gitcreds (0.1.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘gitcreds’ ...
* DONE (gitcreds)
[2023-03-24T07:27:53.070662308+0000] Installing R package: glue (1.6.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘glue’ ...
* DONE (glue)
[2023-03-24T07:27:53.402287781+0000] Installing R package: gtable (0.3.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘gtable’ ...
* DONE (gtable)
[2023-03-24T07:27:53.729905071+0000] Installing R package: ini (0.3.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘ini’ ...
* DONE (ini)
[2023-03-24T07:27:54.041944171+0000] Installing R package: isoband (0.2.7)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘isoband’ ...
* DONE (isoband)
[2023-03-24T07:27:54.456240063+0000] Installing R package: jsonlite (1.8.4)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘jsonlite’ ...
* DONE (jsonlite)
[2023-03-24T07:27:54.856610994+0000] Installing R package: labeling (0.4.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘labeling’ ...
* DONE (labeling)
[2023-03-24T07:27:55.168075601+0000] Installing R package: lattice (0.20-45)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘lattice’ ...
* DONE (lattice)
[2023-03-24T07:27:55.544170384+0000] Installing R package: lazyeval (0.2.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘lazyeval’ ...
* DONE (lazyeval)
[2023-03-24T07:27:55.875131784+0000] Installing R package: leaflet.providers (1.9.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘leaflet.providers’ ...
* DONE (leaflet.providers)
[2023-03-24T07:27:56.187727176+0000] Installing R package: magrittr (2.0.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘magrittr’ ...
* DONE (magrittr)
[2023-03-24T07:27:56.522372634+0000] Installing R package: mime (0.12)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘mime’ ...
* DONE (mime)
[2023-03-24T07:27:56.855961187+0000] Installing R package: pkgconfig (2.0.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘pkgconfig’ ...
* DONE (pkgconfig)
[2023-03-24T07:27:57.169392235+0000] Installing R package: plogr (0.2.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘plogr’ ...
* DONE (plogr)
[2023-03-24T07:27:57.489932172+0000] Installing R package: png (0.1-8)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘png’ ...
* DONE (png)
[2023-03-24T07:27:57.811002346+0000] Installing R package: prettyunits (1.1.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘prettyunits’ ...
* DONE (prettyunits)
[2023-03-24T07:27:58.122845377+0000] Installing R package: proxy (0.4-27)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘proxy’ ...
* DONE (proxy)
[2023-03-24T07:27:58.450038737+0000] Installing R package: ps (1.7.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘ps’ ...
* DONE (ps)
[2023-03-24T07:27:58.786061705+0000] Installing R package: rapidjsonr (1.2.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘rapidjsonr’ ...
* DONE (rapidjsonr)
[2023-03-24T07:27:59.136419073+0000] Installing R package: rappdirs (0.3.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘rappdirs’ ...
* DONE (rappdirs)
[2023-03-24T07:27:59.451184959+0000] Installing R package: rematch (1.0.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘rematch’ ...
* DONE (rematch)
[2023-03-24T07:27:59.762593074+0000] Installing R package: rlang (1.0.6)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘rlang’ ...
* DONE (rlang)
[2023-03-24T07:28:00.190675542+0000] Installing R package: rprojroot (2.0.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘rprojroot’ ...
* DONE (rprojroot)
[2023-03-24T07:28:00.516486268+0000] Installing R package: rstudioapi (0.14)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘rstudioapi’ ...
* DONE (rstudioapi)
[2023-03-24T07:28:00.856791892+0000] Installing R package: sourcetools (0.1.7-1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘sourcetools’ ...
* DONE (sourcetools)
[2023-03-24T07:28:01.214268308+0000] Installing R package: stringi (1.7.12)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘stringi’ ...
* DONE (stringi)
[2023-03-24T07:28:01.765499577+0000] Installing R package: sys (3.4.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘sys’ ...
* DONE (sys)
[2023-03-24T07:28:02.085521321+0000] Installing R package: utf8 (1.2.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘utf8’ ...
* DONE (utf8)
[2023-03-24T07:28:02.421814507+0000] Installing R package: uuid (1.1-0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘uuid’ ...
* DONE (uuid)
[2023-03-24T07:28:02.745063810+0000] Installing R package: viridisLite (0.4.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘viridisLite’ ...
* DONE (viridisLite)
[2023-03-24T07:28:03.098621980+0000] Installing R package: whisker (0.4.1)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘whisker’ ...
* DONE (whisker)
[2023-03-24T07:28:03.426020256+0000] Installing R package: withr (2.5.0)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘withr’ ...
* DONE (withr)
[2023-03-24T07:28:03.753470162+0000] Installing R package: wk (0.7.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘wk’ ...
* DONE (wk)
[2023-03-24T07:28:04.184778200+0000] Installing R package: xfun (0.37)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘xfun’ ...
* DONE (xfun)
[2023-03-24T07:28:04.520061077+0000] Installing R package: xml2 (1.3.3)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘xml2’ ...
* DONE (xml2)
[2023-03-24T07:28:04.893364572+0000] Installing R package: xtable (1.8-4)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘xtable’ ...
* DONE (xtable)
[2023-03-24T07:28:05.236730004+0000] Installing R package: yaml (2.3.7)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘yaml’ ...
* DONE (yaml)
[2023-03-24T07:28:05.581407970+0000] Installing R package: zip (2.2.2)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘zip’ ...
* DONE (zip)
[2023-03-24T07:28:05.949441180+0000] Installing R package: RPostgreSQL (0.7-4)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘RPostgreSQL’ ...
* DONE (RPostgreSQL)
[2023-03-24T07:28:06.289023347+0000] Installing R package: class (7.3-20)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘class’ ...
* DONE (class)
[2023-03-24T07:28:06.627291551+0000] Installing R package: anytime (0.3.9)
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *binary* package ‘anytime’ ...
* DONE (anytime)
[2023-03-24T07:28:07.110068012+0000] Building R package: geometries (0.2.2)
/mnt/packages/build /mnt
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c bbox.cpp -o bbox.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c close.cpp -o close.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c columns.cpp -o columns.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c coordinates.cpp -o coordinates.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c geometries.cpp -o geometries.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c lines.cpp -o lines.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c lists.cpp -o lists.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c nest.cpp -o nest.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c shapes.cpp -o shapes.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c tests.cpp -o tests.o
g++ -std=gnu++17 -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.2.0/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c utils.cpp -o utils.o
g++ -std=gnu++17 -shared -L/opt/R/4.2.0/lib/R/lib -L/usr/local/lib -o geometries.so RcppExports.o bbox.o close.o columns.o coordinates.o geometries.o lines.o lists.o nest.o shapes.o tests.o utils.o -L/opt/R/4.2.0/lib/R/lib -lR
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Rcpp’ 1.0.9 is being loaded, but >= 1.0.10 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
* installing to library ‘/opt/R/4.2.0/lib/R/library’
* installing *source* package ‘geometries’ ...
** package ‘geometries’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
installing to /opt/R/4.2.0/lib/R/library/00LOCK-geometries/00new/geometries/libs
** R
** inst
** byte-compile and prepare package for lazy loading
ERROR: lazy loading failed for package ‘geometries’
* removing ‘/opt/R/4.2.0/lib/R/library/geometries’
################################# End Task Log #################################
Errore: Unhandled Exception: Child Task 1284891488 failed: Error building image: Error building geometries (0.2.2). Build exited with non-zero status: 1
Esecuzione interrotta
is a problem related to the geometries
this is my r session.
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22000)
Matrix products: default
locale:
[1] LC_COLLATE=Italian_Italy.utf8 LC_CTYPE=Italian_Italy.utf8 LC_MONETARY=Italian_Italy.utf8 LC_NUMERIC=C
[5] LC_TIME=Italian_Italy.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] biovsconv_0.0.0.9000 sf_1.0-11 rgdal_1.6-3 RPostgres_1.4.4 mapedit_0.6.0 rpostgis_1.4.3
[7] RPostgreSQL_0.7-4 DBI_1.1.3 raster_3.6-20 sp_1.6-0 shinyWidgets_0.7.6 cicerone_1.0.4
[13] bs4Dash_2.2.1 shinycssloaders_1.0.0 shinyvalidate_0.1.2 shinyjs_2.1.0 leaflet.extras2_1.2.0 leaflet.extras_1.0.0
[19] leaflet_2.1.2 sever_0.0.7 waiter_0.2.5 shinyalert_3.0.0 shinythemes_1.2.0 mapview_2.11.0
[25] forcats_0.5.2 stringr_1.5.0 dplyr_1.0.10 purrr_1.0.0 readr_2.1.3 tidyr_1.2.1
[31] tibble_3.1.8 ggplot2_3.4.1 tidyverse_1.3.2 shiny_1.7.4
loaded via a namespace (and not attached):
[1] googledrive_2.0.0 leafem_0.2.0 colorspace_2.1-0 ellipsis_0.3.2 class_7.3-20
[6] rsconnect_0.8.28 rprojroot_2.0.3 satellite_1.0.4 base64enc_0.1-3 fs_1.6.1
[11] rstudioapi_0.14 proxy_0.4-27 roxygen2_7.2.3 bit64_4.0.5 golem_0.3.5
[16] fansi_1.0.3 lubridate_1.9.0 xml2_1.3.3 codetools_0.2-18 cachem_1.0.7
[21] knitr_1.42 config_0.3.1 pkgload_1.3.2 jsonlite_1.8.4 broom_1.0.2
[26] dbplyr_2.2.1 rgeos_0.6-1 png_0.1-8 compiler_4.2.0 httr_1.4.4
[31] backports_1.4.1 assertthat_0.2.1 fastmap_1.1.1 gargle_1.2.1 cli_3.5.0
[36] later_1.3.0 leaflet.providers_1.9.0 htmltools_0.5.4.9000 tools_4.2.0 gtable_0.3.1
[41] glue_1.6.2 Rcpp_1.0.9 jquerylib_0.1.4 cellranger_1.1.0 vctrs_0.5.1
[46] crosstalk_1.2.0 xfun_0.37 brio_1.1.3 testthat_3.1.6 rvest_1.0.3
[51] timechange_0.1.1 mime_0.12 lifecycle_1.0.3 googlesheets4_1.0.1 terra_1.6-47
[56] scales_1.2.1 hms_1.1.2 promises_1.2.0.1 yaml_2.3.7 curl_4.3.3
[61] memoise_2.0.1 sass_0.4.5 stringi_1.7.12 desc_1.4.2 e1071_1.7-13
[66] attempt_0.3.1 rlang_1.0.6 pkgconfig_2.0.3 fontawesome_0.5.0 lattice_0.20-45
[71] htmlwidgets_1.6.2 bit_4.0.5 tidyselect_1.2.0 magrittr_2.0.3 R6_2.5.1
[76] generics_0.1.3 pillar_1.9.0 haven_2.5.1 withr_2.5.0 units_0.8-1
[81] modelr_0.1.10 crayon_1.5.2 KernSmooth_2.23-20 utf8_1.2.2 tzdb_0.3.0
[86] usethis_2.1.6 grid_4.2.0 readxl_1.4.1 blob_1.2.3 reprex_2.0.2
[91] digest_0.6.31 classInt_0.4-9 webshot_0.5.4 xtable_1.8-4 httpuv_1.6.9
[96] openssl_2.0.5 stats4_4.2.0 munsell_0.5.0 bslib_0.4.2 askpass_1.1
Can someone help me to solve this?