pulling out p-value: Error in chisq.test(.) : all entries of 'x' must be nonnegative and finite

tidyverse
,
1

I have the following input that I named structure:

structure <- structure(list(`1988` = c(NA, 17L, 4L, 249L, NA, NA), `1998` = c(1L, 
57L, 1L, 123L, 114L, NA), `2008` = c(7L, 65L, 3L, 112L, 16L, 
13L), `2018` = c(1L, 90L, 10L, 19L, 15L, NA)), class = "data.frame", row.names = c(NA, 
-6L))

Here's the code I'm using:

p.value.structure <- structure %>%
  chisq.test() %>% 
  glance() %>%
  pull(p.value)

I want to pull out the p-value, but I keep getting the error:

Error in chisq.test(.) : 
all entries of 'x' must be nonnegative and finite

Is there any way I can put the p-value into the p.value.structure object?

2

I suspect chisq.test() does not want NAs.

3

I think the problem is the NAs in the data.

4

Is there a way to just output, "There are NAs in the data."?

5 
withoutNA <- na.omit(structure)
chisq.test(withoutNA)

But note that this leaves you with very few observations.

6

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