Hi Rstudio folks,
I am updating one of my existing shinyapps with quite minimal change with R 4.2.1. The app runs well locally but was not able to be deployed to shinyapps.io (using rsconnect::deployApp). I got the error message about failing to build XML. Any idea why this happened? I tried to deploy it with R 3.6.1 and a similar error occurs but with package curl. The source code of the app is here if it is useful. Thanks for the help!
The log:
> rsconnect::deployApp(appName = "Eyes-On-Apostles", account = "yunyishen")
Preparing to deploy application...
Update application currently deployed at
https://yunyishen.shinyapps.io/Eyes-on-Apostles/? [Y/n] Y
DONE
Uploading bundle for application: 6014543...DONE
Deploying bundle: 6272418 for application: 6014543 ...
Waiting for task: 1216029396
building: Parsing manifest
building: Building image: 7311444
building: Installing system dependencies
building: Fetching packages
building: Building package: XML
################################ Begin Task Log ################################
[2022-09-06T05:18:05.680514413+0000] Execute script: packages/build/igraph.sh
+ set -e
+ apt-get update -qq
+ apt-get install -y libglpk-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libamd2 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcxsparse3
libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libklu1 libldl2 libmetis5
libmongoose2 librbio2 libspqr2 libsuitesparse-dev libsuitesparseconfig5
libumfpack5
Suggested packages:
libiodbc2-dev gmp-doc libgmp10-doc libmpfr-dev
The following NEW packages will be installed:
libamd2 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcxsparse3
libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libklu1 libldl2
libmetis5 libmongoose2 librbio2 libspqr2 libsuitesparse-dev
libsuitesparseconfig5 libumfpack5
0 upgraded, 21 newly installed, 0 to remove and 9 not upgraded.
Need to get 10.2 MB of archives.
After this operation, 128 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libsuitesparseconfig5 amd64 1:5.7.1+dfsg-2 [9736 B]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libamd2 amd64 1:5.7.1+dfsg-2 [20.0 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libbtf1 amd64 1:5.7.1+dfsg-2 [11.3 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcamd2 amd64 1:5.7.1+dfsg-2 [21.7 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libccolamd2 amd64 1:5.7.1+dfsg-2 [23.2 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcolamd2 amd64 1:5.7.1+dfsg-2 [17.0 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libmetis5 amd64 5.1.0.dfsg-5 [169 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcholmod3 amd64 1:5.7.1+dfsg-2 [308 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libcxsparse3 amd64 1:5.7.1+dfsg-2 [64.2 kB]
Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libglpk40 amd64 4.65-2 [378 kB]
Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgmpxx4ldbl amd64 2:6.2.0+dfsg-4 [9128 B]
Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgmp-dev amd64 2:6.2.0+dfsg-4 [320 kB]
Get:13 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libgraphblas3 amd64 1:5.7.1+dfsg-2 [3770 kB]
Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libklu1 amd64 1:5.7.1+dfsg-2 [71.7 kB]
Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libldl2 amd64 1:5.7.1+dfsg-2 [11.0 kB]
Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libmongoose2 amd64 1:5.7.1+dfsg-2 [31.4 kB]
Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libumfpack5 amd64 1:5.7.1+dfsg-2 [229 kB]
Get:18 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 librbio2 amd64 1:5.7.1+dfsg-2 [24.5 kB]
Get:19 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libspqr2 amd64 1:5.7.1+dfsg-2 [64.8 kB]
Get:20 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/main amd64 libsuitesparse-dev amd64 1:5.7.1+dfsg-2 [4161 kB]
Get:21 http://us-east-1.ec2.archive.ubuntu.com/ubuntu focal/universe amd64 libglpk-dev amd64 4.65-2 [445 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 10.2 MB in 0s (37.2 MB/s)
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(Reading database ... 237917 files and directories currently installed.)
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Unpacking libmetis5:amd64 (5.1.0.dfsg-5) ...
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Preparing to unpack .../07-libcholmod3_1%3a5.7.1+dfsg-2_amd64.deb ...
Unpacking libcholmod3:amd64 (1:5.7.1+dfsg-2) ...
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Unpacking libglpk-dev:amd64 (4.65-2) ...
Setting up libgraphblas3:amd64 (1:5.7.1+dfsg-2) ...
Setting up libldl2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libmetis5:amd64 (5.1.0.dfsg-5) ...
Setting up libbtf1:amd64 (1:5.7.1+dfsg-2) ...
Setting up libgmpxx4ldbl:amd64 (2:6.2.0+dfsg-4) ...
Setting up libcxsparse3:amd64 (1:5.7.1+dfsg-2) ...
Setting up libsuitesparseconfig5:amd64 (1:5.7.1+dfsg-2) ...
Setting up librbio2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libgmp-dev:amd64 (2:6.2.0+dfsg-4) ...
Setting up libcolamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libcamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libmongoose2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libglpk40:amd64 (4.65-2) ...
Setting up libklu1:amd64 (1:5.7.1+dfsg-2) ...
Setting up libccolamd2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libcholmod3:amd64 (1:5.7.1+dfsg-2) ...
Setting up libspqr2:amd64 (1:5.7.1+dfsg-2) ...
Setting up libumfpack5:amd64 (1:5.7.1+dfsg-2) ...
Setting up libsuitesparse-dev:amd64 (1:5.7.1+dfsg-2) ...
Setting up libglpk-dev:amd64 (4.65-2) ...
Processing triggers for libc-bin (2.31-0ubuntu9.9) ...
[2022-09-06T05:18:11.239714099+0000] Execute script: packages/build/rgdal.sh
+ set -e
++ lsb_release -cs
+ OS_CODENAME=focal
+ '[' focal == xenial ']'
+ apt-get update -qq
+ apt-get install -y libgdal-dev libproj-dev
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.0.4+dfsg-1build3).
libproj-dev is already the newest version (6.3.1-1).
0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
[2022-09-06T05:18:56.679701289+0000] Installing R package: MASS (7.3-54)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘MASS’ ...
* DONE (MASS)
[2022-09-06T05:18:57.082794571+0000] Installing R package: R6 (2.5.1)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘R6’ ...
* DONE (R6)
[2022-09-06T05:18:57.403374170+0000] Installing R package: RColorBrewer (1.1-2)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘RColorBrewer’ ...
* DONE (RColorBrewer)
[2022-09-06T05:18:57.717727213+0000] Installing R package: Rcpp (1.0.7)
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *binary* package ‘Rcpp’ ...
* DONE (Rcpp)
[2022-09-06T05:18:58.823845894+0000] Building R package: XML (3.99-0.6)
/mnt/packages/build /mnt
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /usr/bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... /usr/bin/xml2-config
USE_XML2 = yes
SED_EXTENDED_ARG: -E
Minor 9, Patch 10 for 2.9.10
Located parser file -I/usr/include/libxml2/parser.h
Checking for 1.8: -I/usr/include/libxml2
Using libxml2.*
checking for gzopen in -lz... yes
checking for xmlParseFile in -lxml2... yes
checking for xmlHashSize in -lxml2... yes
Using built-in xmlHashSize
Checking DTD parsing (presence of externalSubset)...
checking for xmlHashSize in -lxml2... yes
Found xmlHashSize
checking for xmlOutputBufferCreateBuffer in -lxml2... yes
have xmlOutputBufferCreateBuffer()
checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
checking libxml/xmlversion.h usability... yes
checking libxml/xmlversion.h presence... yes
checking for libxml/xmlversion.h... yes
Expat: FALSE
Checking for return type of xmlHashScan element routine.
No return value for xmlHashScan
xmlNs has a context field
Checking for cetype_t enumeration
Using recent version of R with cetype_t enumeration type for encoding
checking for xmlsec1-config... no
nodegc default
xml-debug default
Version has XML_WITH_ZLIB
Version has xmlHasFeature()
****************************************
Configuration information:
Libxml settings
libxml include directory: -I/usr/include/libxml2
libxml library directory: -lxml2 -lz -lxml2
libxml 2: -DLIBXML2=1
Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1
Link flags: -lxml2 -lz -lxml2
****************************************
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/supports.R
config.status: creating inst/scripts/RSXML.csh
config.status: creating inst/scripts/RSXML.bsh
gcc -I"/opt/R/4.2.1/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c DocParse.c -o DocParse.o
* installing to library ‘/opt/R/4.2.1/lib/R/library’
* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
DocParse.c: In function ‘RS_XML_ParseTree’:
DocParse.c:165:7: error: ‘PROBLEM’ undeclared (first use in this function)
165 | PROBLEM "Can't find file %s", CHAR_DEREF(STRING_ELT(fileName, 0))
| ^~~~~~~
DocParse.c:165:7: note: each undeclared identifier is reported only once for each function it appears in
DocParse.c:165:14: error: expected ‘;’ before string constant
165 | PROBLEM "Can't find file %s", CHAR_DEREF(STRING_ELT(fileName, 0))
| ^~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c:229:14: error: expected ‘;’ before string constant
229 | PROBLEM "error in creating parser for %s", name
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c:249:11: error: expected ‘;’ before string constant
249 | PROBLEM "XML document is invalid"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c: In function ‘RS_XML_internalNodeNamespaceDefinitions’:
DocParse.c:519:8: error: ‘PROBLEM’ undeclared (first use in this function)
519 | PROBLEM "R_internalNodeNamespaceDefinitions expects InternalXMLNode objects"
| ^~~~~~~
DocParse.c:519:15: error: expected ‘;’ before string constant
519 | PROBLEM "R_internalNodeNamespaceDefinitions expects InternalXMLNode objects"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c: In function ‘R_getNodeChildByIndex’:
DocParse.c:1254:2: error: ‘PROBLEM’ undeclared (first use in this function)
1254 | PROBLEM "cannot index an internal node with a negative number %d", num
| ^~~~~~~
DocParse.c:1254:9: error: expected ‘;’ before string constant
1254 | PROBLEM "cannot index an internal node with a negative number %d", num
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c: In function ‘RS_XML_setDocumentName’:
DocParse.c:1303:2: error: ‘PROBLEM’ undeclared (first use in this function)
1303 | PROBLEM "NULL pointer supplied for internal document"
| ^~~~~~~
DocParse.c:1303:9: error: expected ‘;’ before string constant
1303 | PROBLEM "NULL pointer supplied for internal document"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c: In function ‘RS_XML_getDocumentName’:
DocParse.c:1326:2: error: ‘PROBLEM’ undeclared (first use in this function)
1326 | PROBLEM "NULL pointer supplied for internal document"
| ^~~~~~~
DocParse.c:1326:9: error: expected ‘;’ before string constant
1326 | PROBLEM "NULL pointer supplied for internal document"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| ;
DocParse.c: In function ‘RS_XML_xmlXIncludeProcessTreeFlags’:
DocParse.c:1375:2: error: ‘PROBLEM’ undeclared (first use in this function)
1375 | PROBLEM "failed in XInclude"
| ^~~~~~~
DocParse.c:1375:9: error: expected ‘;’ before string constant
1375 | PROBLEM "failed in XInclude"
| ^~~~~~~~~~~~~~~~~~~~~
| ;
make: *** [/opt/R/4.2.1/lib/R/etc/Makeconf:168: DocParse.o] Error 1
ERROR: compilation failed for package ‘XML’
* removing ‘/opt/R/4.2.1/lib/R/library/XML’
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 1216029397 failed: Error building image: Error building XML (3.99-0.6). Build exited with non-zero status: 1
The rsconnect::dependencies results:
> rsconnect::appDependencies()
package version source
1 MASS 7.3-54 CRAN
2 Matrix 1.4-1 CRAN
3 R6 2.5.1 CRAN
4 RColorBrewer 1.1-2 CRAN
5 Rcpp 1.0.7 CRAN
6 RcppArmadillo 0.10.6.0.0 CRAN
7 TTR 0.24.3 CRAN
8 XML 3.99-0.6 CRAN
9 assertthat 0.2.1 CRAN
10 backports 1.2.1 CRAN
11 base64enc 0.1-3 CRAN
12 broom 0.7.8 CRAN
13 bslib 0.2.5.1 CRAN
14 cachem 1.0.5 CRAN
15 cli 3.0.1 CRAN
16 colorspace 2.0-2 CRAN
17 commonmark 1.7 CRAN
18 cpp11 0.3.1 CRAN
19 crayon 1.4.1 CRAN
20 crosstalk 1.1.1 CRAN
21 curl 4.3.2 CRAN
22 data.table 1.14.0 CRAN
23 digest 0.6.27 CRAN
24 dplyr 1.0.7 CRAN
25 ellipsis 0.3.2 CRAN
26 evaluate 0.14 CRAN
27 fansi 0.5.0 CRAN
28 farver 2.1.0 CRAN
29 fastmap 1.1.0 CRAN
30 flexdashboard 0.5.2 CRAN
31 forecast 8.16 CRAN
32 fracdiff 1.5-1 CRAN
33 fs 1.5.0 CRAN
34 generics 0.1.0 CRAN
35 ggplot2 3.3.5 CRAN
36 glue 1.4.2 CRAN
37 gridExtra 2.3 CRAN
38 gtable 0.3.0 CRAN
39 highcharter 0.9.4 CRAN
40 highr 0.9 CRAN
41 htmltools 0.5.1.1 CRAN
42 htmlwidgets 1.5.4 CRAN
43 httpuv 1.6.1 CRAN
44 igraph 1.2.6 CRAN
45 isoband 0.2.5 CRAN
46 jquerylib 0.1.4 CRAN
47 jsonlite 1.7.2 CRAN
48 knitr 1.33 CRAN
49 labeling 0.4.2 CRAN
50 later 1.2.0 CRAN
51 lattice 0.20-44 CRAN
52 lazyeval 0.2.2 CRAN
53 leaflet 2.1.1 CRAN
54 leaflet.providers 1.9.0 CRAN
55 lifecycle 1.0.0 CRAN
56 lmtest 0.9-40 CRAN
57 lubridate 1.7.10 CRAN
58 magrittr 2.0.1 CRAN
59 markdown 1.1 CRAN
60 mgcv 1.8-36 CRAN
61 mime 0.11 CRAN
62 munsell 0.5.0 CRAN
63 nlme 3.1-152 CRAN
64 nnet 7.3-16 CRAN
65 pillar 1.6.2 CRAN
66 pkgconfig 2.0.3 CRAN
67 plyr 1.8.6 CRAN
68 png 0.1-7 CRAN
69 promises 1.2.0.1 CRAN
70 purrr 0.3.4 CRAN
71 quadprog 1.5-8 CRAN
72 quantmod 0.4.18 CRAN
73 rappdirs 0.3.3 CRAN
74 raster 3.4-13 CRAN
75 reshape2 1.4.4 CRAN
76 rgdal 1.5-29 CRAN
77 rjson 0.2.20 CRAN
78 rlang 0.4.11 CRAN
79 rlist 0.4.6.2 CRAN
80 rmarkdown 2.13 CRAN
81 sass 0.4.0 CRAN
82 scales 1.1.1 CRAN
83 shiny 1.6.0 CRAN
84 shinydashboard 0.7.2 CRAN
85 sourcetools 0.1.7 CRAN
86 sp 1.4-5 CRAN
87 stringi 1.7.2 CRAN
88 stringr 1.4.0 CRAN
89 tibble 3.1.4 CRAN
90 tidyr 1.1.3 CRAN
91 tidyselect 1.1.1 CRAN
92 timeDate 3043.102 CRAN
93 tinytex 0.32 CRAN
94 tseries 0.10-51 CRAN
95 urca 1.3-0 CRAN
96 utf8 1.2.2 CRAN
97 vctrs 0.3.8 CRAN
98 viridis 0.6.1 CRAN
99 viridisLite 0.4.0 CRAN
100 withr 2.4.2 CRAN
101 xfun 0.30 CRAN
102 xtable 1.8-4 CRAN
103 xts 0.12.1 CRAN
104 yaml 2.2.1 CRAN
105 zoo 1.8-9 CRAN
my sessioninfo:
> sessionInfo(package = NULL)
R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] reshape2_1.4.4 forecast_8.16 sp_1.4-5
[4] leaflet_2.1.1 ggplot2_3.3.5 shinydashboard_0.7.2
[7] shiny_1.6.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.7 lattice_0.20-44 leaflet.providers_1.9.0
[4] zoo_1.8-9 assertthat_0.2.1 digest_0.6.27
[7] packrat_0.8.1 lmtest_0.9-40 utf8_1.2.2
[10] mime_0.11 R6_2.5.1 plyr_1.8.6
[13] pillar_1.6.2 rlang_0.4.11 curl_4.3.2
[16] jquerylib_0.1.4 fracdiff_1.5-1 TTR_0.24.3
[19] Matrix_1.4-1 labeling_0.4.2 splines_4.2.1
[22] rgdal_1.5-29 stringr_1.4.0 htmlwidgets_1.5.4
[25] munsell_0.5.0 compiler_4.2.1 httpuv_1.6.1
[28] pkgconfig_2.0.3 askpass_1.1 urca_1.3-0
[31] mgcv_1.8-36 htmltools_0.5.1.1 nnet_7.3-16
[34] openssl_2.0.2 tidyselect_1.1.1 tibble_3.1.4
[37] quadprog_1.5-8 fansi_0.5.0 crayon_1.4.1
[40] dplyr_1.0.7 withr_2.4.2 later_1.2.0
[43] grid_4.2.1 nlme_3.1-152 jsonlite_1.7.2
[46] xtable_1.8-4 gtable_0.3.0 lifecycle_1.0.0
[49] DBI_1.1.1 magrittr_2.0.1 scales_1.1.1
[52] quantmod_0.4.18 cachem_1.0.5 stringi_1.7.2
[55] farver_2.1.0 promises_1.2.0.1 tseries_0.10-51
[58] timeDate_3043.102 bslib_0.2.5.1 ellipsis_0.3.2
[61] xts_0.12.1 generics_0.1.0 vctrs_0.3.8
[64] tools_4.2.1 glue_1.4.2 purrr_0.3.4
[67] crosstalk_1.1.1 rsconnect_0.8.27 parallel_4.2.1
[70] fastmap_1.1.0 yaml_2.2.1 colorspace_2.0-2
[73] BiocManager_1.30.16 sass_0.4.0