When I try to run Rstudio-server in conda environment
There are some errors
"""[rserver] ERROR system error 1 (Operation not permitted)"""
I used a script to run
#!/bin/bash
##############################################
# USAGE: ./start_rstudio_server <PORT>
# e.g. ./start_rstudio_server 8787
##############################################
CWD="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null && pwd )"
USER=`whoami`
# set a user-specific secure cookie key
COOKIE_KEY_PATH=/tmp/rstudio-server/${USER}_secure-cookie-key
rm -f $COOKIE_KEY_PATH
mkdir -p $(dirname $COOKIE_KEY_PATH)
# Rserver >= version 1.3 requires the --auth-revocation-list-dir parameter
if [ $(sed -n '/^1.3./p;q' /usr/lib/rstudio-server/VERSION) ] ;
then
REVOCATION_LIST_DIR=/tmp/rstudio-server/${USER}_revocation-list-dir
mkdir -p $REVOCATION_LIST_DIR
REVOCATION_LIST_PAR="--auth-revocation-list-dir=$REVOCATION_LIST_DIR"
else
REVOCATION_LIST_PAR=""
fi
python -c 'import uuid; print(uuid.uuid4())' > $COOKIE_KEY_PATH
# uuid > $COOKIE_KEY_PATH
chmod 600 $COOKIE_KEY_PATH
# store the currently activated conda environment in a file to be ready by rsession.sh
CONDA_ENV_PATH=/tmp/rstudio-server/${USER}_current_env
rm -f $CONDA_ENV_PATH
echo "## Current env is >>"
echo $CONDA_PREFIX
echo $CONDA_PREFIX > $CONDA_ENV_PATH
export RETICULATE_PYTHON=$CONDA_PREFIX/bin/python
/usr/lib/rstudio-server/bin/rserver --server-daemonize=0 \
--www-port=$1 \
--secure-cookie-key-file=$COOKIE_KEY_PATH \
--rsession-which-r=$(which R) \
--rsession-ld-library-path=$CONDA_PREFIX/lib \
--rsession-path="$CWD/rsession.sh" \
$REVOCATION_LIST_PAR \
--server-user=${USER}
please comment
Thanks