Unable to install Tidyverse package with Ubuntu 16.4 - 'non-zero exit status'

Hi all,

I am completely new to R and I am not particularly good with technology. I installed Rstudio on my laptop and tried to install tidyverse but it constantly says 'non-zero exit status'. I have read dozens of blogs and looked for answers everywherer and followed all instructions I could find, but nothing seems to work. Help!

  • installing source package ‘Rcpp’ ...
    ** package ‘Rcpp’ successfully unpacked and MD5 sums checked
    ** libs
    g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o
    In file included from ../inst/include/RcppCommon.h:135:0,
    from ../inst/include/Rcpp.h:27,
    from api.cpp:24:
    ../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_list7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
    ../inst/include/Rcpp/lang.h:45:55: error: ‘Rf_list6’ was not declared in this scope
    x0 = Rf_cons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
    ^
    ../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_lang7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
    ../inst/include/Rcpp/lang.h:53:56: error: ‘Rf_list6’ was not declared in this scope
    x0 = Rf_lcons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
    ^
    /usr/lib/R/etc/Makeconf:143: recipe for target 'api.o' failed
    make: *** [api.o] Error 1
    ERROR: compilation failed for package ‘Rcpp’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/Rcpp’
    Warning in install.packages :
    installation of package ‘Rcpp’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/plyr’
    Warning in install.packages :
    installation of package ‘plyr’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘htmltools’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/htmltools’
    Warning in install.packages :
    installation of package ‘htmltools’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘isoband’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/isoband’
    Warning in install.packages :
    installation of package ‘isoband’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘dplyr’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dplyr’
    Warning in install.packages :
    installation of package ‘dplyr’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘lubridate’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/lubridate’
    Warning in install.packages :
    installation of package ‘lubridate’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘readr’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readr’
    Warning in install.packages :
    installation of package ‘readr’ had non-zero exit status
    ERROR: dependency ‘Rcpp’ is not available for package ‘readxl’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readxl’
    Warning in install.packages :
    installation of package ‘readxl’ had non-zero exit status
    ERROR: dependencies ‘plyr’, ‘Rcpp’ are not available for package ‘reshape2’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reshape2’
    Warning in install.packages :
    installation of package ‘reshape2’ had non-zero exit status
    ERROR: dependency ‘htmltools’ is not available for package ‘rmarkdown’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/rmarkdown’
    Warning in install.packages :
    installation of package ‘rmarkdown’ had non-zero exit status
    ERROR: dependency ‘dplyr’ is not available for package ‘dbplyr’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dbplyr’
    Warning in install.packages :
    installation of package ‘dbplyr’ had non-zero exit status
    ERROR: dependency ‘isoband’ is not available for package ‘ggplot2’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/ggplot2’
    Warning in install.packages :
    installation of package ‘ggplot2’ had non-zero exit status
    ERROR: dependencies ‘Rcpp’, ‘readr’ are not available for package ‘haven’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/haven’
    Warning in install.packages :
    installation of package ‘haven’ had non-zero exit status
    ERROR: dependencies ‘dplyr’, ‘Rcpp’ are not available for package ‘tidyr’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyr’
    Warning in install.packages :
    installation of package ‘tidyr’ had non-zero exit status
    ERROR: dependencies ‘dplyr’, ‘reshape2’, ‘tidyr’ are not available for package ‘broom’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/broom’
    Warning in install.packages :
    installation of package ‘broom’ had non-zero exit status
    ERROR: dependency ‘rmarkdown’ is not available for package ‘reprex’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reprex’
    Warning in install.packages :
    installation of package ‘reprex’ had non-zero exit status
    ERROR: dependencies ‘broom’, ‘dplyr’, ‘tidyr’ are not available for package ‘modelr’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/modelr’
    Warning in install.packages :
    installation of package ‘modelr’ had non-zero exit status
    ERROR: dependencies ‘broom’, ‘dbplyr’, ‘dplyr’, ‘ggplot2’, ‘haven’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘tidyr’ are not available for package ‘tidyverse’
  • removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyverse’
    Warning in install.packages :
    installation of package ‘tidyverse’ had non-zero exit status

The downloaded source packages are in
‘/tmp/RtmpAqSrFu/downloaded_packages’

here is a better version of the error (I omitted some parts in the middle)

> install.packages("tidyverse")
Installing package into ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependencies ‘plyr’, ‘htmltools’, ‘reshape2’, ‘Rcpp’, ‘isoband’, ‘rmarkdown’, ‘broom’, ‘dbplyr’, ‘dplyr’, ‘ggplot2’, ‘haven’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘tidyr’

--2020-04-09 00:31:38--  https://cran.rstudio.com/src/contrib/plyr_1.8.6.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 401191 (392K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/plyr_1.8.6.tar.gz’

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--2020-04-09 00:31:38--  https://cran.rstudio.com/src/contrib/htmltools_0.4.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 52542 (51K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/htmltools_0.4.0.tar.gz’

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    50K .                                                     100% 19.6M=0.03s



--2020-04-09 00:31:43--  https://cran.rstudio.com/src/contrib/broom_0.5.5.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1223871 (1.2M) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/broom_0.5.5.tar.gz’

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2020-04-09 00:31:44 (3.77 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/broom_0.5.5.tar.gz’ saved [1223871/1223871]

--2020-04-09 00:31:44--  https://cran.rstudio.com/src/contrib/dbplyr_1.4.2.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 303397 (296K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/dbplyr_1.4.2.tar.gz’

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   250K .......... .......... .......... .......... ......    100% 3.04M=0.1s

2020-04-09 00:31:44 (2.20 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/dbplyr_1.4.2.tar.gz’ saved [303397/303397]

--2020-04-09 00:31:44--  https://cran.rstudio.com/src/contrib/dplyr_0.8.5.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
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Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/dplyr_0.8.5.tar.gz’

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--2020-04-09 00:31:45--  https://cran.rstudio.com/src/contrib/ggplot2_3.3.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
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2020-04-09 00:31:46 (3.62 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/ggplot2_3.3.0.tar.gz’ saved [3031461/3031461]

--2020-04-09 00:31:46--  https://cran.rstudio.com/src/contrib/haven_2.2.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
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2020-04-09 00:31:47 (2.02 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/haven_2.2.0.tar.gz’ saved [272575/272575]

--2020-04-09 00:31:47--  https://cran.rstudio.com/src/contrib/lubridate_1.7.8.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 459456 (449K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/lubridate_1.7.8.tar.gz’

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* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c api.cpp -o api.o
In file included from ../inst/include/RcppCommon.h:135:0,
                 from ../inst/include/Rcpp.h:27,
                 from api.cpp:24:
../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_list7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
../inst/include/Rcpp/lang.h:45:55: error: ‘Rf_list6’ was not declared in this scope
     x0 = Rf_cons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
                                                       ^
../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_lang7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
../inst/include/Rcpp/lang.h:53:56: error: ‘Rf_list6’ was not declared in this scope
     x0 = Rf_lcons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
                                                        ^
/usr/lib/R/etc/Makeconf:143: recipe for target 'api.o' failed
make: *** [api.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/Rcpp’
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ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/plyr’
Warning in install.packages :
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ERROR: dependency ‘Rcpp’ is not available for package ‘htmltools’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/htmltools’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/isoband’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dplyr’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/lubridate’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readr’
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ERROR: dependency ‘Rcpp’ is not available for package ‘readxl’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readxl’
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  installation of package ‘readxl’ had non-zero exit status
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reshape2’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/rmarkdown’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dbplyr’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/ggplot2’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/haven’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyr’
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* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/broom’
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  installation of package ‘broom’ had non-zero exit status
ERROR: dependency ‘rmarkdown’ is not available for package ‘reprex’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reprex’
Warning in install.packages :
  installation of package ‘reprex’ had non-zero exit status
ERROR: dependencies ‘broom’, ‘dplyr’, ‘tidyr’ are not available for package ‘modelr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/modelr’
Warning in install.packages :
  installation of package ‘modelr’ had non-zero exit status
ERROR: dependencies ‘broom’, ‘dbplyr’, ‘dplyr’, ‘ggplot2’, ‘haven’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘tidyr’ are not available for package ‘tidyverse’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyverse’
Warning in install.packages :
  installation of package ‘tidyverse’ had non-zero exit status

The downloaded source packages are in
	‘/tmp/RtmpAqSrFu/downloaded_packages’

Thank you for your reply. I am a Linguistics student and we have an assignment due in 2 weeks - we have to analyze data using R. I do not understand much about it but I wanted to read and practice as much as possible to be able to do the assignment... however, as soon as I downloaded R studio and tried to install Tidyverse, which is the package needed for my assignment, it gives me all these errors and I am unable to continue studying! I am quarantined at home with no other computer. I figured with Windows it would be easier! I read lots of blogs and followed their advice but it still doesn't work. I don't know if I'd be able to do a reprex as I am not very skilled...

I don't know how it happened but this morning when I tried to install tidyverse again, it seemed to work! There are lots of warning though, is it something I should worry about? Also, it talks about conflicts... should I do something about those? Thank you :sweat_smile: :sweat_smile: :sweat_smile:

* DONE (broom)
* installing *source* package ‘reprex’ ...
** package ‘reprex’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (reprex)
* installing *source* package ‘modelr’ ...
** package ‘modelr’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
* DONE (modelr)
* installing *source* package ‘tidyverse’ ...
** package ‘tidyverse’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
Warning: replacing previous import by ‘rlang::quo_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexpr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexprs’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensyms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::glimpse’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::frame_data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::type_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tribble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::%>%’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame_’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::trunc_mat’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::has_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tbl_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::add_row’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst_’ when loading ‘dbplyr’
Note: the specification for S3 class “difftime” in package ‘hms’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “AsIs” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “hms” in package ‘jsonlite’ seems equivalent to one from package ‘hms’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘lubridate’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
Warning: replacing previous import by ‘rlang::quo_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexpr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexprs’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensyms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::glimpse’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::frame_data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::type_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tribble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::%>%’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame_’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::trunc_mat’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::has_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tbl_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::add_row’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst_’ when loading ‘dbplyr’
Note: the specification for S3 class “difftime” in package ‘hms’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “AsIs” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “hms” in package ‘jsonlite’ seems equivalent to one from package ‘hms’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘lubridate’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
* DONE (tidyverse)

The downloaded source packages are in
	‘/tmp/Rtmpfg0oK9/downloaded_packages’
> library(tidyverse)
── Attaching packages ────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.0 ──
✓ ggplot2 3.3.0     ✓ purrr   0.3.3
✓ tibble  3.0.0     ✓ dplyr   0.8.5
✓ tidyr   1.0.2     ✓ stringr 1.4.0
✓ readr   1.3.1     ✓ forcats 0.5.0
── Conflicts ───────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
x dplyr::filter() masks stats::filter()
x dplyr::lag()    masks stats::lag()
There were 42 warnings (use warnings() to see them)ype or paste code here

This topic was automatically closed 21 days after the last reply. New replies are no longer allowed.

Hi, and welcome!

Please see the FAQ: What's a reproducible example (`reprex`) and how do I do one? Using a reprex, complete with representative data will attract quicker and more answers.

However, this question isn't a coding question, there's enough to go on. (Actually, more :grin: than enough, as I hope will come clear.)

The cascade of failure begins at the top with

> `/usr/lib/R/etc/Makeconf:143: recipe for target 'api.o' failed
> make: *** [api.o] Error 1
> ERROR: compilation failed for package ‘Rcpp’ 

To check this, I just re-installed Rcpp on my Ubuntu 19.10 box without problem. This is a good time to compare notes: this could fail on a machine with insufficient RAM, and I have 32GB (not a brag, I'm further behind on the arm's race than I am ahead of anyone!)

What are you working with?

I think you should be ok if I’m right that the warning :warning: give a flag to potential version inter-compatibility issues. Be sure to regularly run update.packages