Unable to install Tidyverse package with Ubuntu 16.4 - 'non-zero exit status'

michela · April 8, 2020, 10:33pm

Hi all,

I am completely new to R and I am not particularly good with technology. I installed Rstudio on my laptop and tried to install tidyverse but it constantly says 'non-zero exit status'. I have read dozens of blogs and looked for answers everywherer and followed all instructions I could find, but nothing seems to work. Help!

installing source package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o
In file included from ../inst/include/RcppCommon.h:135:0,
from ../inst/include/Rcpp.h:27,
from api.cpp:24:
../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_list7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
../inst/include/Rcpp/lang.h:45:55: error: ‘Rf_list6’ was not declared in this scope
x0 = Rf_cons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
^
../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_lang7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
../inst/include/Rcpp/lang.h:53:56: error: ‘Rf_list6’ was not declared in this scope
x0 = Rf_lcons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
^
/usr/lib/R/etc/Makeconf:143: recipe for target 'api.o' failed
make: *** [api.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/Rcpp’
Warning in install.packages :
installation of package ‘Rcpp’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/plyr’
Warning in install.packages :
installation of package ‘plyr’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘htmltools’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/htmltools’
Warning in install.packages :
installation of package ‘htmltools’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘isoband’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/isoband’
Warning in install.packages :
installation of package ‘isoband’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘dplyr’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dplyr’
Warning in install.packages :
installation of package ‘dplyr’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘lubridate’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/lubridate’
Warning in install.packages :
installation of package ‘lubridate’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘readr’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readr’
Warning in install.packages :
installation of package ‘readr’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘readxl’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readxl’
Warning in install.packages :
installation of package ‘readxl’ had non-zero exit status
ERROR: dependencies ‘plyr’, ‘Rcpp’ are not available for package ‘reshape2’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reshape2’
Warning in install.packages :
installation of package ‘reshape2’ had non-zero exit status
ERROR: dependency ‘htmltools’ is not available for package ‘rmarkdown’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/rmarkdown’
Warning in install.packages :
installation of package ‘rmarkdown’ had non-zero exit status
ERROR: dependency ‘dplyr’ is not available for package ‘dbplyr’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dbplyr’
Warning in install.packages :
installation of package ‘dbplyr’ had non-zero exit status
ERROR: dependency ‘isoband’ is not available for package ‘ggplot2’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/ggplot2’
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies ‘Rcpp’, ‘readr’ are not available for package ‘haven’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/haven’
Warning in install.packages :
installation of package ‘haven’ had non-zero exit status
ERROR: dependencies ‘dplyr’, ‘Rcpp’ are not available for package ‘tidyr’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyr’
Warning in install.packages :
installation of package ‘tidyr’ had non-zero exit status
ERROR: dependencies ‘dplyr’, ‘reshape2’, ‘tidyr’ are not available for package ‘broom’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/broom’
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
ERROR: dependency ‘rmarkdown’ is not available for package ‘reprex’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reprex’
Warning in install.packages :
installation of package ‘reprex’ had non-zero exit status
ERROR: dependencies ‘broom’, ‘dplyr’, ‘tidyr’ are not available for package ‘modelr’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/modelr’
Warning in install.packages :
installation of package ‘modelr’ had non-zero exit status
ERROR: dependencies ‘broom’, ‘dbplyr’, ‘dplyr’, ‘ggplot2’, ‘haven’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘tidyr’ are not available for package ‘tidyverse’
removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyverse’
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status

The downloaded source packages are in
‘/tmp/RtmpAqSrFu/downloaded_packages’

michela · April 8, 2020, 11:11pm

here is a better version of the error (I omitted some parts in the middle)

> install.packages("tidyverse")
Installing package into ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependencies ‘plyr’, ‘htmltools’, ‘reshape2’, ‘Rcpp’, ‘isoband’, ‘rmarkdown’, ‘broom’, ‘dbplyr’, ‘dplyr’, ‘ggplot2’, ‘haven’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘tidyr’

--2020-04-09 00:31:38--  https://cran.rstudio.com/src/contrib/plyr_1.8.6.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 401191 (392K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/plyr_1.8.6.tar.gz’

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2020-04-09 00:31:38 (3.40 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/plyr_1.8.6.tar.gz’ saved [401191/401191]

--2020-04-09 00:31:38--  https://cran.rstudio.com/src/contrib/htmltools_0.4.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 52542 (51K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/htmltools_0.4.0.tar.gz’

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    50K .                                                     100% 19.6M=0.03s



--2020-04-09 00:31:43--  https://cran.rstudio.com/src/contrib/broom_0.5.5.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1223871 (1.2M) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/broom_0.5.5.tar.gz’

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2020-04-09 00:31:44 (3.77 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/broom_0.5.5.tar.gz’ saved [1223871/1223871]

--2020-04-09 00:31:44--  https://cran.rstudio.com/src/contrib/dbplyr_1.4.2.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 303397 (296K) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/dbplyr_1.4.2.tar.gz’

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2020-04-09 00:31:44 (2.20 MB/s) - ‘/tmp/RtmpAqSrFu/downloaded_packages/dbplyr_1.4.2.tar.gz’ saved [303397/303397]

--2020-04-09 00:31:44--  https://cran.rstudio.com/src/contrib/dplyr_0.8.5.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
Connecting to cran.rstudio.com (cran.rstudio.com)|99.86.162.102|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1378766 (1.3M) [application/x-gzip]
Saving to: ‘/tmp/RtmpAqSrFu/downloaded_packages/dplyr_0.8.5.tar.gz’

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--2020-04-09 00:31:45--  https://cran.rstudio.com/src/contrib/ggplot2_3.3.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
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--2020-04-09 00:31:46--  https://cran.rstudio.com/src/contrib/haven_2.2.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
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--2020-04-09 00:31:47--  https://cran.rstudio.com/src/contrib/lubridate_1.7.8.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 99.86.162.102, 99.86.162.119, 99.86.162.80, ...
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* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c api.cpp -o api.o
In file included from ../inst/include/RcppCommon.h:135:0,
                 from ../inst/include/Rcpp.h:27,
                 from api.cpp:24:
../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_list7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
../inst/include/Rcpp/lang.h:45:55: error: ‘Rf_list6’ was not declared in this scope
     x0 = Rf_cons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
                                                       ^
../inst/include/Rcpp/lang.h: In function ‘SEXPREC* Rcpp::Rcpp_lang7(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
../inst/include/Rcpp/lang.h:53:56: error: ‘Rf_list6’ was not declared in this scope
     x0 = Rf_lcons(x0, Rcpp_list6(x1, x2, x3, x4, x5, x6));
                                                        ^
/usr/lib/R/etc/Makeconf:143: recipe for target 'api.o' failed
make: *** [api.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/Rcpp’
Warning in install.packages :
  installation of package ‘Rcpp’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/plyr’
Warning in install.packages :
  installation of package ‘plyr’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘htmltools’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/htmltools’
Warning in install.packages :
  installation of package ‘htmltools’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘isoband’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/isoband’
Warning in install.packages :
  installation of package ‘isoband’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘dplyr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dplyr’
Warning in install.packages :
  installation of package ‘dplyr’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘lubridate’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/lubridate’
Warning in install.packages :
  installation of package ‘lubridate’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘readr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readr’
Warning in install.packages :
  installation of package ‘readr’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘readxl’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/readxl’
Warning in install.packages :
  installation of package ‘readxl’ had non-zero exit status
ERROR: dependencies ‘plyr’, ‘Rcpp’ are not available for package ‘reshape2’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reshape2’
Warning in install.packages :
  installation of package ‘reshape2’ had non-zero exit status
ERROR: dependency ‘htmltools’ is not available for package ‘rmarkdown’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/rmarkdown’
Warning in install.packages :
  installation of package ‘rmarkdown’ had non-zero exit status
ERROR: dependency ‘dplyr’ is not available for package ‘dbplyr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/dbplyr’
Warning in install.packages :
  installation of package ‘dbplyr’ had non-zero exit status
ERROR: dependency ‘isoband’ is not available for package ‘ggplot2’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/ggplot2’
Warning in install.packages :
  installation of package ‘ggplot2’ had non-zero exit status
ERROR: dependencies ‘Rcpp’, ‘readr’ are not available for package ‘haven’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/haven’
Warning in install.packages :
  installation of package ‘haven’ had non-zero exit status
ERROR: dependencies ‘dplyr’, ‘Rcpp’ are not available for package ‘tidyr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyr’
Warning in install.packages :
  installation of package ‘tidyr’ had non-zero exit status
ERROR: dependencies ‘dplyr’, ‘reshape2’, ‘tidyr’ are not available for package ‘broom’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/broom’
Warning in install.packages :
  installation of package ‘broom’ had non-zero exit status
ERROR: dependency ‘rmarkdown’ is not available for package ‘reprex’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/reprex’
Warning in install.packages :
  installation of package ‘reprex’ had non-zero exit status
ERROR: dependencies ‘broom’, ‘dplyr’, ‘tidyr’ are not available for package ‘modelr’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/modelr’
Warning in install.packages :
  installation of package ‘modelr’ had non-zero exit status
ERROR: dependencies ‘broom’, ‘dbplyr’, ‘dplyr’, ‘ggplot2’, ‘haven’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘tidyr’ are not available for package ‘tidyverse’
* removing ‘/home/michela/R/x86_64-pc-linux-gnu-library/3.2/tidyverse’
Warning in install.packages :
  installation of package ‘tidyverse’ had non-zero exit status

The downloaded source packages are in
	‘/tmp/RtmpAqSrFu/downloaded_packages’

technocrat · April 9, 2020, 12:29am

Hi, and welcome!

Please see the FAQ: What's a reproducible example (`reprex`) and how do I create one? Using a reprex, complete with representative data will attract quicker and more answers.

However, this question isn't a coding question, there's enough to go on. (Actually, more than enough, as I hope will come clear.)

The cascade of failure begins at the top with

> `/usr/lib/R/etc/Makeconf:143: recipe for target 'api.o' failed
> make: *** [api.o] Error 1
> ERROR: compilation failed for package ‘Rcpp’

To check this, I just re-installed Rcpp on my Ubuntu 19.10 box without problem. This is a good time to compare notes: this could fail on a machine with insufficient RAM, and I have 32GB (not a brag, I'm further behind on the arm's race than I am ahead of anyone!)

What are you working with?

michela · April 9, 2020, 9:36am

Thank you for your reply. I am a Linguistics student and we have an assignment due in 2 weeks - we have to analyze data using R. I do not understand much about it but I wanted to read and practice as much as possible to be able to do the assignment... however, as soon as I downloaded R studio and tried to install Tidyverse, which is the package needed for my assignment, it gives me all these errors and I am unable to continue studying! I am quarantined at home with no other computer. I figured with Windows it would be easier! I read lots of blogs and followed their advice but it still doesn't work. I don't know if I'd be able to do a reprex as I am not very skilled...

michela · April 9, 2020, 10:14am

I don't know how it happened but this morning when I tried to install tidyverse again, it seemed to work! There are lots of warning though, is it something I should worry about? Also, it talks about conflicts... should I do something about those? Thank you

* DONE (broom)
* installing *source* package ‘reprex’ ...
** package ‘reprex’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (reprex)
* installing *source* package ‘modelr’ ...
** package ‘modelr’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
* DONE (modelr)
* installing *source* package ‘tidyverse’ ...
** package ‘tidyverse’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
Warning: replacing previous import by ‘rlang::quo_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexpr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexprs’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensyms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::glimpse’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::frame_data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::type_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tribble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::%>%’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame_’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::trunc_mat’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::has_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tbl_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::add_row’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst_’ when loading ‘dbplyr’
Note: the specification for S3 class “difftime” in package ‘hms’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “AsIs” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “hms” in package ‘jsonlite’ seems equivalent to one from package ‘hms’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘lubridate’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by ‘rlang:::=’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::as_name’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::dots_n’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘broom’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘broom’
Warning: replacing previous import by ‘rlang::quo_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexpr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::.data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enexprs’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensyms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::enquo’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::quos’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::expr’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::sym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::as_label’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::ensym’ when loading ‘dbplyr’
Warning: replacing previous import by ‘rlang::syms’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::glimpse’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_data_frame’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::frame_data’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::type_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tribble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::%>%’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::data_frame_’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::trunc_mat’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::has_name’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::tbl_sum’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::add_row’ when loading ‘dbplyr’
Warning: replacing previous import by ‘tibble::lst_’ when loading ‘dbplyr’
Note: the specification for S3 class “difftime” in package ‘hms’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “AsIs” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘jsonlite’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “hms” in package ‘jsonlite’ seems equivalent to one from package ‘hms’: not turning on duplicate class definitions for this class.
Note: the specification for S3 class “difftime” in package ‘lubridate’ seems equivalent to one from package ‘DBI’: not turning on duplicate class definitions for this class.
* DONE (tidyverse)

The downloaded source packages are in
	‘/tmp/Rtmpfg0oK9/downloaded_packages’
> library(tidyverse)
── Attaching packages ────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.0 ──
✓ ggplot2 3.3.0     ✓ purrr   0.3.3
✓ tibble  3.0.0     ✓ dplyr   0.8.5
✓ tidyr   1.0.2     ✓ stringr 1.4.0
✓ readr   1.3.1     ✓ forcats 0.5.0
── Conflicts ───────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
x dplyr::filter() masks stats::filter()
x dplyr::lag()    masks stats::lag()
There were 42 warnings (use warnings() to see them)ype or paste code here

technocrat · April 9, 2020, 2:02pm

I think you should be ok if I’m right that the warning give a flag to potential version inter-compatibility issues. Be sure to regularly run update.packages

system · April 30, 2020, 2:02pm

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